miRNA display CGI


Results 41 - 60 of 686 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 77740 0.66 0.51555
Target:  5'- aGGGgGUGG-GggCGGCCuCCGCCCuCCc -3'
miRNA:   3'- -CCCgCACCaCggGCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 124591 0.66 0.51555
Target:  5'- -uGCGaUGG-GCCCcggcgaagcGACCCgGgCCGCCg -3'
miRNA:   3'- ccCGC-ACCaCGGG---------CUGGGgCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 119768 0.66 0.51465
Target:  5'- --cCGUGGUGCaguacguCCGcgagaGCCCCGCCgGCg -3'
miRNA:   3'- cccGCACCACG-------GGC-----UGGGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 88802 0.66 0.51465
Target:  5'- cGGaCGgggGGcUGCCgGGCCgccccccccgaagCCGCCCGCg -3'
miRNA:   3'- cCC-GCa--CC-ACGGgCUGG-------------GGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 38753 0.66 0.51465
Target:  5'- gGGGCGggGGUcGgUCGuagcggcGCCCCGCgCGUCg -3'
miRNA:   3'- -CCCGCa-CCA-CgGGC-------UGGGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 7852 0.66 0.51465
Target:  5'- gGGGCGggGGUcGgUCGuagcggcGCCCCGCgCGUCg -3'
miRNA:   3'- -CCCGCa-CCA-CgGGC-------UGGGGCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 32358 0.66 0.51465
Target:  5'- gGGGCGcc--GCCgCGcgcGCCCCccgccagGCCCGCCg -3'
miRNA:   3'- -CCCGCaccaCGG-GC---UGGGG-------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 52913 0.66 0.51016
Target:  5'- aGGGCGUcGcGCUCGAggcggaucucguuguCCUCGCCCaGCUg -3'
miRNA:   3'- -CCCGCAcCaCGGGCU---------------GGGGCGGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 82065 0.66 0.51016
Target:  5'- uGGCGcgGGUGCcgugggagaugaacgCCGACgCCCugGgCCGCCu -3'
miRNA:   3'- cCCGCa-CCACG---------------GGCUG-GGG--CgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1670 0.66 0.506579
Target:  5'- uGGcCGcGGcGCCgCGG-CCCGCCCGCg -3'
miRNA:   3'- cCC-GCaCCaCGG-GCUgGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 29944 0.66 0.506579
Target:  5'- gGGaGCGgGG-GgCCGGgCUCGCgCCGCCg -3'
miRNA:   3'- -CC-CGCaCCaCgGGCUgGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 123828 0.66 0.506579
Target:  5'- cGGGCG-GG-GCCCGGg--CGCCCggGCCa -3'
miRNA:   3'- -CCCGCaCCaCGGGCUgggGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 53346 0.66 0.506579
Target:  5'- aGGGCuucggGGUcgccgccgcgucGCCCGGCCgCCGCuCCuGCUc -3'
miRNA:   3'- -CCCGca---CCA------------CGGGCUGG-GGCG-GG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 154729 0.66 0.506579
Target:  5'- cGGGCG-GG-GCCCGGg--CGCCCggGCCa -3'
miRNA:   3'- -CCCGCaCCaCGGGCUgggGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 32571 0.66 0.506579
Target:  5'- uGGcCGcGGcGCCgCGG-CCCGCCCGCg -3'
miRNA:   3'- cCC-GCaCCaCGG-GCUgGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 71945 0.66 0.506579
Target:  5'- cGGCGcgGGgcgGCCCuGCCgcgaCGCgCGCCg -3'
miRNA:   3'- cCCGCa-CCa--CGGGcUGGg---GCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 45946 0.66 0.506579
Target:  5'- aGGUuauugGGUcUCCGACCCCucCCCGCCc -3'
miRNA:   3'- cCCGca---CCAcGGGCUGGGGc-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 65200 0.66 0.506579
Target:  5'- gGGGCGcaUGGaGgCCGACgaCGCCUGCg -3'
miRNA:   3'- -CCCGC--ACCaCgGGCUGggGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 83980 0.66 0.506579
Target:  5'- gGGGCGUcGcgGCCCGGCCCUccuugggggGCgUCGCg -3'
miRNA:   3'- -CCCGCAcCa-CGGGCUGGGG---------CG-GGCGg -5'
21519 5' -66.1 NC_004812.1 + 58063 0.66 0.506579
Target:  5'- uGGGCcccGGcGCCCGGCgCCGaggCCGCg -3'
miRNA:   3'- -CCCGca-CCaCGGGCUGgGGCg--GGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.