miRNA display CGI


Results 21 - 40 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 1880 0.78 0.088953
Target:  5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3'
miRNA:   3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 1920 0.66 0.480083
Target:  5'- uGGGCcgaGGcuccgGCCgGggcGCUCCGCCCGUCg -3'
miRNA:   3'- -CCCGca-CCa----CGGgC---UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2206 0.77 0.098075
Target:  5'- cGGCcuUGGaGcCCCGGCCCgGCCCGCCg -3'
miRNA:   3'- cCCGc-ACCaC-GGGCUGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2348 0.68 0.381731
Target:  5'- cGGGCGgcagGGcGUCgGGCCCgGCgCGCg -3'
miRNA:   3'- -CCCGCa---CCaCGGgCUGGGgCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 2384 0.7 0.279129
Target:  5'- cGGGUGUGGUguguugGCCCGcgacucaccuACaCCCGuccccCCCGCCc -3'
miRNA:   3'- -CCCGCACCA------CGGGC----------UG-GGGC-----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2906 0.66 0.497675
Target:  5'- uGGGUGgaccgcccgGGggaGCCCG-CCCCGUCCucgGUCa -3'
miRNA:   3'- -CCCGCa--------CCa--CGGGCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 2953 0.76 0.113428
Target:  5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3'
miRNA:   3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3126 0.67 0.421091
Target:  5'- uGGUGgggagGGUGUCgCGGCCgCCGCgcuccccuCCGCCc -3'
miRNA:   3'- cCCGCa----CCACGG-GCUGG-GGCG--------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3243 0.67 0.454283
Target:  5'- cGGCGcccgccaggGGcGCCCGcgcCCCCGCC-GCCc -3'
miRNA:   3'- cCCGCa--------CCaCGGGCu--GGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 3327 0.66 0.480083
Target:  5'- gGGGag-GG-GCCCGaggggccgccgcGCCCCGCgccccggcccCCGCCg -3'
miRNA:   3'- -CCCgcaCCaCGGGC------------UGGGGCG----------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3413 0.67 0.429252
Target:  5'- cGGCGUGuG-GCUgGGCCCCGgCgGCa -3'
miRNA:   3'- cCCGCAC-CaCGGgCUGGGGCgGgCGg -5'
21519 5' -66.1 NC_004812.1 + 3450 0.72 0.213844
Target:  5'- --cCGUGGUcCCCGuggccCCCCGCCCGCg -3'
miRNA:   3'- cccGCACCAcGGGCu----GGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 3503 0.67 0.454283
Target:  5'- cGGGCGcGG-GCCCGGggCCGgCgGCCc -3'
miRNA:   3'- -CCCGCaCCaCGGGCUggGGCgGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 3509 0.67 0.421091
Target:  5'- gGGGCGgc--GCCCaGACagCCCGCCCaCCa -3'
miRNA:   3'- -CCCGCaccaCGGG-CUG--GGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 3600 0.7 0.297751
Target:  5'- aGGCccUGGcccagGCCCuGACCCagGCCCGCCc -3'
miRNA:   3'- cCCGc-ACCa----CGGG-CUGGGg-CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3635 0.73 0.199713
Target:  5'- cGGCG-GGcGCgCGGCgCCGCCCGCg -3'
miRNA:   3'- cCCGCaCCaCGgGCUGgGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 3730 0.7 0.297751
Target:  5'- cGGCGcucagGCCCaGCCCagGCCCGCCg -3'
miRNA:   3'- cCCGCacca-CGGGcUGGGg-CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3790 0.71 0.261445
Target:  5'- cGGCGcucagGCCCGACCUCagGCCCGCg -3'
miRNA:   3'- cCCGCacca-CGGGCUGGGG--CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 3799 0.66 0.497675
Target:  5'- cGGCGgcgacGGcgGCCuCGGCgCCGCCgGCg -3'
miRNA:   3'- cCCGCa----CCa-CGG-GCUGgGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 3856 0.66 0.480083
Target:  5'- -cGcCGUGGUcGCCgCGGCCgCCgcgGCCCGCa -3'
miRNA:   3'- ccC-GCACCA-CGG-GCUGG-GG---CGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.