miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 91 0.77 0.105489
Target:  5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 115 0.71 0.244684
Target:  5'- gGGGcCG-GGaGCCCG-CCCgggaGCCCGCCc -3'
miRNA:   3'- -CCC-GCaCCaCGGGCuGGGg---CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 144 0.71 0.273131
Target:  5'- -cGCGUGGcGCCgCGccGCCgCGCCCGCg -3'
miRNA:   3'- ccCGCACCaCGG-GC--UGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 206 0.67 0.471402
Target:  5'- cGGGgGaGG-GCCCGggucgcgcaGCCCCGgccCCCGCg -3'
miRNA:   3'- -CCCgCaCCaCGGGC---------UGGGGC---GGGCGg -5'
21519 5' -66.1 NC_004812.1 + 524 0.74 0.169874
Target:  5'- gGGGCG-GGcccgcgcGCCCGGgCCCuCCCGCCu -3'
miRNA:   3'- -CCCGCaCCa------CGGGCUgGGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 552 0.68 0.405053
Target:  5'- cGGCGacGcGCCgcgCGACgCCCGCCCGUCc -3'
miRNA:   3'- cCCGCacCaCGG---GCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 585 0.69 0.344901
Target:  5'- cGGCGcGGccCCCGGCCCCGggcguccccuccCCCGCg -3'
miRNA:   3'- cCCGCaCCacGGGCUGGGGC------------GGGCGg -5'
21519 5' -66.1 NC_004812.1 + 708 0.72 0.223736
Target:  5'- cGGCGcGGcagcccggGCgCCGGCCCCGCCCcuccccucccccGCCg -3'
miRNA:   3'- cCCGCaCCa-------CG-GGCUGGGGCGGG------------CGG- -5'
21519 5' -66.1 NC_004812.1 + 743 0.7 0.279129
Target:  5'- cGGGgGUGGgggcgGCgCGACCCUcuucCCCGUCu -3'
miRNA:   3'- -CCCgCACCa----CGgGCUGGGGc---GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 856 0.71 0.261445
Target:  5'- -cGCGUGuccccgcgGCCgCGAgCCCCGCCCGCg -3'
miRNA:   3'- ccCGCACca------CGG-GCU-GGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 954 0.67 0.41947
Target:  5'- cGGCuGUGGaggccuaggggaGCCCGGCgugCCCGCCC-CCg -3'
miRNA:   3'- cCCG-CACCa-----------CGGGCUG---GGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 1030 0.66 0.51555
Target:  5'- -cGCGaGG-GCCCGgccGCCCgCGCgCGCCc -3'
miRNA:   3'- ccCGCaCCaCGGGC---UGGG-GCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1153 0.66 0.496789
Target:  5'- cGGCGgcgcgaGCCCGGCCCCccgcucccucgucGCCguCGCCg -3'
miRNA:   3'- cCCGCacca--CGGGCUGGGG-------------CGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 1248 0.68 0.389405
Target:  5'- cGGGCGgcgccgcGGccGCCCGuuGgUCCGCCgGCCg -3'
miRNA:   3'- -CCCGCa------CCa-CGGGC--UgGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 1303 0.75 0.147538
Target:  5'- aGGCG-GG-GCgCCGACCCCcgggcCCCGCCg -3'
miRNA:   3'- cCCGCaCCaCG-GGCUGGGGc----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1348 0.66 0.480083
Target:  5'- cGGUuUGGcGUCCGccgcGCCCCcccucgGCCCGCCc -3'
miRNA:   3'- cCCGcACCaCGGGC----UGGGG------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1439 0.67 0.454283
Target:  5'- -uGCG-GG-GcCCCGGuCCCCGCCC-CCa -3'
miRNA:   3'- ccCGCaCCaC-GGGCU-GGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 1488 0.73 0.195186
Target:  5'- cGGGCGgcggcGGaGCgCCGGCcggCCCGCgCCGCCg -3'
miRNA:   3'- -CCCGCa----CCaCG-GGCUG---GGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1670 0.66 0.506579
Target:  5'- uGGcCGcGGcGCCgCGG-CCCGCCCGCg -3'
miRNA:   3'- cCC-GCaCCaCGG-GCUgGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 1728 0.69 0.352059
Target:  5'- --------cGCCCGGCCCCGCgCGCCu -3'
miRNA:   3'- cccgcaccaCGGGCUGGGGCGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.