miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 8057 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 84772 0.77 0.105489
Target:  5'- cGGGCG-GGccGCCCGGCCgCCGCacccucccccuuCCGCCa -3'
miRNA:   3'- -CCCGCaCCa-CGGGCUGG-GGCG------------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 125600 0.77 0.105489
Target:  5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 105151 0.77 0.108075
Target:  5'- uGGuaGUGGUGgCCGuagcGCCCCGCCUGCg -3'
miRNA:   3'- -CCcgCACCACgGGC----UGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 40457 0.77 0.108075
Target:  5'- gGGGCGUacGGgcgGCCCGucuCCCCGUaauacaCCGCCa -3'
miRNA:   3'- -CCCGCA--CCa--CGGGCu--GGGGCG------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 116498 0.77 0.111797
Target:  5'- gGGGCcgggGGUcgcggacggacgcgcGCCCGGCCgcccgCCGCCCGCCg -3'
miRNA:   3'- -CCCGca--CCA---------------CGGGCUGG-----GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2953 0.76 0.113428
Target:  5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3'
miRNA:   3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138147 0.76 0.113428
Target:  5'- cGGGCGcGGgGCCgCGcccCCCCGCCgCGCCa -3'
miRNA:   3'- -CCCGCaCCaCGG-GCu--GGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 33020 0.76 0.119027
Target:  5'- cGGGCGcgcGuGUGCUCGGCCgCCGCCC-CCg -3'
miRNA:   3'- -CCCGCa--C-CACGGGCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 153500 0.77 0.104724
Target:  5'- cGGCGaGGaGCUCGgcggcgccucccccGCCCCGCCCGCCu -3'
miRNA:   3'- cCCGCaCCaCGGGC--------------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 97325 0.77 0.103965
Target:  5'- cGGGCG-GGUGCCgcgcgcccgcgacccUGAUCCCGCgcaCCGCCg -3'
miRNA:   3'- -CCCGCaCCACGG---------------GCUGGGGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 64213 0.77 0.102961
Target:  5'- aGGGCGccaaGGUGCUCGACCCCacGUCCGgCu -3'
miRNA:   3'- -CCCGCa---CCACGGGCUGGGG--CGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 111577 0.83 0.040177
Target:  5'- cGGCGUGGUgaGCCCGGCCCacaagaugguggCGCCCGCg -3'
miRNA:   3'- cCCGCACCA--CGGGCUGGG------------GCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 51190 0.81 0.051613
Target:  5'- cGGGCGcgGGcGCCgGGCCCCGCCgagCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGGgCUGGGGCGG---GCGG- -5'
21519 5' -66.1 NC_004812.1 + 23823 0.81 0.055624
Target:  5'- gGGGCGgcgacccgGGgccgGCCCGGCCCgGCgCCGCCc -3'
miRNA:   3'- -CCCGCa-------CCa---CGGGCUGGGgCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 110296 0.78 0.088953
Target:  5'- aGGGUGUGccUGCCCGugCCCGCcCCGUa -3'
miRNA:   3'- -CCCGCACc-ACGGGCugGGGCG-GGCGg -5'
21519 5' -66.1 NC_004812.1 + 1880 0.78 0.088953
Target:  5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3'
miRNA:   3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 32077 0.77 0.095714
Target:  5'- gGGGCccGUGGgGCCCGGCCCCGgaggUCGCCu -3'
miRNA:   3'- -CCCG--CACCaCGGGCUGGGGCg---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2206 0.77 0.098075
Target:  5'- cGGCcuUGGaGcCCCGGCCCgGCCCGCCg -3'
miRNA:   3'- cCCGc-ACCaC-GGGCUGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138995 0.77 0.10049
Target:  5'- cGGCGgagcGGUucGCCCGGgCCCGCCuCGCCc -3'
miRNA:   3'- cCCGCa---CCA--CGGGCUgGGGCGG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.