miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 109689 0.65 0.530945
Target:  5'- cGGCGgauGUGUCCGccgcggcggcggccGCCgCGCCCGaCCc -3'
miRNA:   3'- cCCGCac-CACGGGC--------------UGGgGCGGGC-GG- -5'
21519 5' -66.1 NC_004812.1 + 145784 0.65 0.530035
Target:  5'- cGGCGUGGccgaagaccugcgUGUCCucgcggagacgugcGGCCCCGCCggaGCg -3'
miRNA:   3'- cCCGCACC-------------ACGGG--------------CUGGGGCGGg--CGg -5'
21519 5' -66.1 NC_004812.1 + 86022 0.66 0.488843
Target:  5'- gGGGCGUGGgcggucaggaacUGCUauuaGagugacucaGCCCCagGCCCGCUu -3'
miRNA:   3'- -CCCGCACC------------ACGGg---C---------UGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 94339 0.66 0.48533
Target:  5'- -cGCGUGGgucuccgcgcgcgGCgCGGCCCCGgCgCGCUg -3'
miRNA:   3'- ccCGCACCa------------CGgGCUGGGGCgG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 126856 0.66 0.480083
Target:  5'- cGGUuUGGcGUCCGccgcGCCCCcccucgGCCCGCCc -3'
miRNA:   3'- cCCGcACCaCGGGC----UGGGG------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3856 0.66 0.480083
Target:  5'- -cGcCGUGGUcGCCgCGGCCgCCgcgGCCCGCa -3'
miRNA:   3'- ccC-GCACCA-CGG-GCUGG-GG---CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 140569 0.66 0.488843
Target:  5'- cGGUGaucgGGgGCCUcugcgcgcuGACCCUGgCCGCCa -3'
miRNA:   3'- cCCGCa---CCaCGGG---------CUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 126296 0.66 0.528216
Target:  5'- gGGGCcguuccUGGUGCCCgcggagguccccaggGACCCCucggcgugcugcGCCCuggGCCc -3'
miRNA:   3'- -CCCGc-----ACCACGGG---------------CUGGGG------------CGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 83428 0.66 0.486207
Target:  5'- gGGGaCGUGGUcGCCaauACCCCaGCCuugaggucguccauCGCCu -3'
miRNA:   3'- -CCC-GCACCA-CGGgc-UGGGG-CGG--------------GCGG- -5'
21519 5' -66.1 NC_004812.1 + 1920 0.66 0.480083
Target:  5'- uGGGCcgaGGcuccgGCCgGggcGCUCCGCCCGUCg -3'
miRNA:   3'- -CCCGca-CCa----CGGgC---UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138378 0.66 0.488843
Target:  5'- cGGGCG-GGgGCgCGuACgCCGCCCgggugGCCu -3'
miRNA:   3'- -CCCGCaCCaCGgGC-UGgGGCGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 15063 0.66 0.488843
Target:  5'- aGGCGgacUGGcgGCgacaCGuCgCCGCCCGCCg -3'
miRNA:   3'- cCCGC---ACCa-CGg---GCuGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 100676 0.66 0.488843
Target:  5'- cGGCGUcGG-GCCCGGCgCUCGCgCGg- -3'
miRNA:   3'- cCCGCA-CCaCGGGCUG-GGGCGgGCgg -5'
21519 5' -66.1 NC_004812.1 + 35579 0.66 0.480083
Target:  5'- gGGGCGgcggGGgcaCCCGACggcgaCCGCCgaggcgugCGCCg -3'
miRNA:   3'- -CCCGCa---CCac-GGGCUGg----GGCGG--------GCGG- -5'
21519 5' -66.1 NC_004812.1 + 65109 0.66 0.488843
Target:  5'- aGGaGUGGcugGCgCGGCCCCuGCCgGUCg -3'
miRNA:   3'- cCCgCACCa--CGgGCUGGGG-CGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 125065 0.66 0.480083
Target:  5'- cGGCGuUGGUGggcgcaCUCGAUCCCGgCUGUCc -3'
miRNA:   3'- cCCGC-ACCAC------GGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 119210 0.66 0.488843
Target:  5'- ---gGUGGUGUCCGcgGCCCC-CCCuuGCCu -3'
miRNA:   3'- cccgCACCACGGGC--UGGGGcGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 97277 0.66 0.480083
Target:  5'- cGGGgugccuguCGUGG-GaCCCGACCCCcgucgaccacgaGCUCGCg -3'
miRNA:   3'- -CCC--------GCACCaC-GGGCUGGGG------------CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 118419 0.66 0.487963
Target:  5'- cGGGCGacaGGcgGCCucacacgCGGCCgCCGCCC-CCu -3'
miRNA:   3'- -CCCGCa--CCa-CGG-------GCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 133211 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.