miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 48321 1.12 0.000298
Target:  5'- cGGGCGUGGUGCCCGACCCCGCCCGCCu -3'
miRNA:   3'- -CCCGCACCACGGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 50145 0.85 0.029695
Target:  5'- -cGCGUGGggggcGCCCGGCUCCGUCCGCCg -3'
miRNA:   3'- ccCGCACCa----CGGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 10788 0.84 0.032849
Target:  5'- cGGGCGUGG-GCcgCCGACCCCGCC-GCCc -3'
miRNA:   3'- -CCCGCACCaCG--GGCUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 83402 0.84 0.034547
Target:  5'- aGGGCGgccgcgaGGacGuCCCGGCCCCGCCCGCCc -3'
miRNA:   3'- -CCCGCa------CCa-C-GGGCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 111577 0.83 0.040177
Target:  5'- cGGCGUGGUgaGCCCGGCCCacaagaugguggCGCCCGCg -3'
miRNA:   3'- cCCGCACCA--CGGGCUGGG------------GCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 51190 0.81 0.051613
Target:  5'- cGGGCGcgGGcGCCgGGCCCCGCCgagCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGGgCUGGGGCGG---GCGG- -5'
21519 5' -66.1 NC_004812.1 + 23823 0.81 0.055624
Target:  5'- gGGGCGgcgacccgGGgccgGCCCGGCCCgGCgCCGCCc -3'
miRNA:   3'- -CCCGCa-------CCa---CGGGCUGGGgCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 105420 0.8 0.066191
Target:  5'- cGGCG-GG-GCCCGgcGCCCgCGCCCGCCc -3'
miRNA:   3'- cCCGCaCCaCGGGC--UGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18565 0.8 0.067851
Target:  5'- cGGGagcCGUGGUGCCCG-CCCgCGUUCGCCc -3'
miRNA:   3'- -CCC---GCACCACGGGCuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 54642 0.78 0.084699
Target:  5'- cGGGCGgcgGGcGUCCGcgGCCCCugacGCCCGCCg -3'
miRNA:   3'- -CCCGCa--CCaCGGGC--UGGGG----CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 44343 0.78 0.084699
Target:  5'- uGGGCGggcUGGUGgcCCCGcccaccaaccacGCCCCGUCCGCCc -3'
miRNA:   3'- -CCCGC---ACCAC--GGGC------------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 32781 0.78 0.088953
Target:  5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3'
miRNA:   3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 1880 0.78 0.088953
Target:  5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3'
miRNA:   3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 110296 0.78 0.088953
Target:  5'- aGGGUGUGccUGCCCGugCCCGCcCCGUa -3'
miRNA:   3'- -CCCGCACc-ACGGGCugGGGCG-GGCGg -5'
21519 5' -66.1 NC_004812.1 + 59282 0.78 0.093408
Target:  5'- aGGGuCGcgGGcGCgCGGCaCCCGCCCGCCg -3'
miRNA:   3'- -CCC-GCa-CCaCGgGCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 32077 0.77 0.095714
Target:  5'- gGGGCccGUGGgGCCCGGCCCCGgaggUCGCCu -3'
miRNA:   3'- -CCCG--CACCaCGGGCUGGGGCg---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 33107 0.77 0.098075
Target:  5'- cGGCcuUGGaGcCCCGGCCCgGCCCGCCg -3'
miRNA:   3'- cCCGc-ACCaC-GGGCUGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 2206 0.77 0.098075
Target:  5'- cGGCcuUGGaGcCCCGGCCCgGCCCGCCg -3'
miRNA:   3'- cCCGc-ACCaC-GGGCUGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138995 0.77 0.10049
Target:  5'- cGGCGgagcGGUucGCCCGGgCCCGCCuCGCCc -3'
miRNA:   3'- cCCGCa---CCA--CGGGCUgGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 64213 0.77 0.102961
Target:  5'- aGGGCGccaaGGUGCUCGACCCCacGUCCGgCu -3'
miRNA:   3'- -CCCGCa---CCACGGGCUGGGG--CGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.