miRNA display CGI


Results 21 - 40 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 103910 0.66 0.741551
Target:  5'- aGCGCGGGCccguccccgaagcccAGgUCcucGAGCAGGCGg -3'
miRNA:   3'- aCGUGCCUG---------------UCgAGcguCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 43596 0.66 0.743468
Target:  5'- cGC-CGGcCAGCcgauagcccacgcCGCGGGGCAGGgGg -3'
miRNA:   3'- aCGuGCCuGUCGa------------GCGUCUCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 130273 0.66 0.743468
Target:  5'- gGCGcCGGGCcacggcucgccgcuGGCguacccgUCGCGGuAGCGGGCGu -3'
miRNA:   3'- aCGU-GCCUG--------------UCG-------AGCGUC-UCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 56586 0.66 0.775425
Target:  5'- aGCGCGGcgAUGGCgccgCGCGGGG-GGGUGa -3'
miRNA:   3'- aCGUGCC--UGUCGa---GCGUCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 18543 0.66 0.76616
Target:  5'- cGCGCucGCGGCcagCGCGGcGCGGGCc -3'
miRNA:   3'- aCGUGccUGUCGa--GCGUCuCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 66465 0.66 0.76616
Target:  5'- gGCACGGAgAGCgagCGCAcgacGGCgaucuccucggaGGGCGu -3'
miRNA:   3'- aCGUGCCUgUCGa--GCGUc---UCG------------UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 113011 0.66 0.756779
Target:  5'- gGCAgaGGAC-GCagaCGCgAGGGCGGGCGc -3'
miRNA:   3'- aCGUg-CCUGuCGa--GCG-UCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 121733 0.66 0.756779
Target:  5'- gUGCcCGGGcCGGCgCGCGGcGGgGGGCGc -3'
miRNA:   3'- -ACGuGCCU-GUCGaGCGUC-UCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 26190 0.66 0.747291
Target:  5'- gGCGacggGGGCGGCgCGUAGuccgccAGCAGGCu -3'
miRNA:   3'- aCGUg---CCUGUCGaGCGUC------UCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 47581 0.66 0.775425
Target:  5'- aGCGCGGAgGGCgCuCGGGGUcgcGGCGa -3'
miRNA:   3'- aCGUGCCUgUCGaGcGUCUCGu--CCGC- -5'
21524 5' -59.2 NC_004812.1 + 103751 0.66 0.737705
Target:  5'- gGCGCGGAUgucuauggGGC-CGCGGu-CGGGCGu -3'
miRNA:   3'- aCGUGCCUG--------UCGaGCGUCucGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 26678 0.66 0.76988
Target:  5'- aUGCGCuGGAgGGCggggcugCGUAGGcggcgacggauccacGCAGGCGc -3'
miRNA:   3'- -ACGUG-CCUgUCGa------GCGUCU---------------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 128592 0.66 0.76616
Target:  5'- cGCGuCGGuccaGGCggGCGGGGCGGGgGa -3'
miRNA:   3'- aCGU-GCCug--UCGagCGUCUCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 111258 0.66 0.76616
Target:  5'- -aCGCGGuGCGGCcCGUGGGcGCGGGCa -3'
miRNA:   3'- acGUGCC-UGUCGaGCGUCU-CGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 144852 0.66 0.784565
Target:  5'- cGCGgGGAgAGCgUGCGGAGCcccacGGCc -3'
miRNA:   3'- aCGUgCCUgUCGaGCGUCUCGu----CCGc -5'
21524 5' -59.2 NC_004812.1 + 100642 0.66 0.756779
Target:  5'- cGCACGG-CGGCgcgagccgCGCcGGGcCGGGCc -3'
miRNA:   3'- aCGUGCCuGUCGa-------GCGuCUC-GUCCGc -5'
21524 5' -59.2 NC_004812.1 + 103626 0.66 0.737705
Target:  5'- aGCACGcGGCGGUagcucuccUCGCGGGcGCGGaGCu -3'
miRNA:   3'- aCGUGC-CUGUCG--------AGCGUCU-CGUC-CGc -5'
21524 5' -59.2 NC_004812.1 + 101332 0.66 0.737705
Target:  5'- cGUGCaGGC-GCUCGCcgcAGAgGCGGGCGu -3'
miRNA:   3'- aCGUGcCUGuCGAGCG---UCU-CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 106715 0.66 0.756779
Target:  5'- cUGCGCGuGCuGCUgGCGG-GCgaGGGCGa -3'
miRNA:   3'- -ACGUGCcUGuCGAgCGUCuCG--UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 7667 0.66 0.747291
Target:  5'- gGCccGCGGGCcgggAGCgggGguGGGCGGGCGc -3'
miRNA:   3'- aCG--UGCCUG----UCGag-CguCUCGUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.