miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 26190 0.66 0.747291
Target:  5'- gGCGacggGGGCGGCgCGUAGuccgccAGCAGGCu -3'
miRNA:   3'- aCGUg---CCUGUCGaGCGUC------UCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 98665 0.66 0.737705
Target:  5'- cGCACGcGgGGgUCGagcCGGGGCGGGCGc -3'
miRNA:   3'- aCGUGCcUgUCgAGC---GUCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 137234 0.66 0.737705
Target:  5'- cUGC-UGGACGuccGCgCGguGGGCGGGCu -3'
miRNA:   3'- -ACGuGCCUGU---CGaGCguCUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 130273 0.66 0.743468
Target:  5'- gGCGcCGGGCcacggcucgccgcuGGCguacccgUCGCGGuAGCGGGCGu -3'
miRNA:   3'- aCGU-GCCUG--------------UCG-------AGCGUC-UCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 124910 0.66 0.747291
Target:  5'- gGC-CGGGCGGCg-GCGgGGGC-GGCGg -3'
miRNA:   3'- aCGuGCCUGUCGagCGU-CUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 101332 0.66 0.737705
Target:  5'- cGUGCaGGC-GCUCGCcgcAGAgGCGGGCGu -3'
miRNA:   3'- aCGUGcCUGuCGAGCG---UCU-CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 103751 0.66 0.737705
Target:  5'- gGCGCGGAUgucuauggGGC-CGCGGu-CGGGCGu -3'
miRNA:   3'- aCGUGCCUG--------UCGaGCGUCucGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 6339 0.66 0.747291
Target:  5'- aGgAgGGGCAGCagGgGGcGGCAGGCGc -3'
miRNA:   3'- aCgUgCCUGUCGagCgUC-UCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 103910 0.66 0.741551
Target:  5'- aGCGCGGGCccguccccgaagcccAGgUCcucGAGCAGGCGg -3'
miRNA:   3'- aCGUGCCUG---------------UCgAGcguCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 7667 0.66 0.747291
Target:  5'- gGCccGCGGGCcgggAGCgggGguGGGCGGGCGc -3'
miRNA:   3'- aCG--UGCCUG----UCGag-CguCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 43596 0.66 0.743468
Target:  5'- cGC-CGGcCAGCcgauagcccacgcCGCGGGGCAGGgGg -3'
miRNA:   3'- aCGuGCCuGUCGa------------GCGUCUCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 119907 0.66 0.756779
Target:  5'- cGCGCcccGCAGCccCGCAGcccgaGGCGGGCGc -3'
miRNA:   3'- aCGUGcc-UGUCGa-GCGUC-----UCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 22258 0.66 0.747291
Target:  5'- gGUugGGGCcGa-CGCGGuGCAGGCu -3'
miRNA:   3'- aCGugCCUGuCgaGCGUCuCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 107178 0.66 0.747291
Target:  5'- uUGCGcCGGGCGa---GCGGAGCGuGGCGg -3'
miRNA:   3'- -ACGU-GCCUGUcgagCGUCUCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 24853 0.66 0.734811
Target:  5'- cGcCGCGGGCGGCgcggcUGCGGGggcguccucgaggcGCAGGCu -3'
miRNA:   3'- aC-GUGCCUGUCGa----GCGUCU--------------CGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 30421 0.66 0.747291
Target:  5'- gGCACGuGAagguCAGggCGCGGAGCgAGGgGg -3'
miRNA:   3'- aCGUGC-CU----GUCgaGCGUCUCG-UCCgC- -5'
21524 5' -59.2 NC_004812.1 + 144852 0.66 0.784565
Target:  5'- cGCGgGGAgAGCgUGCGGAGCcccacGGCc -3'
miRNA:   3'- aCGUgCCUgUCGaGCGUCUCGu----CCGc -5'
21524 5' -59.2 NC_004812.1 + 51192 0.66 0.756779
Target:  5'- gGCGCGGGCgccgGGCccCGCcGAGCGccGGCa -3'
miRNA:   3'- aCGUGCCUG----UCGa-GCGuCUCGU--CCGc -5'
21524 5' -59.2 NC_004812.1 + 76269 0.66 0.755835
Target:  5'- cGCGCGccgccucGACGGCgcgCGCGGccgccuccAGCAGcGCGg -3'
miRNA:   3'- aCGUGC-------CUGUCGa--GCGUC--------UCGUC-CGC- -5'
21524 5' -59.2 NC_004812.1 + 103626 0.66 0.737705
Target:  5'- aGCACGcGGCGGUagcucuccUCGCGGGcGCGGaGCu -3'
miRNA:   3'- aCGUGC-CUGUCG--------AGCGUCU-CGUC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.