Results 1 - 20 of 495 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 44919 | 1.07 | 0.001699 |
Target: 5'- cUGCACGGACAGCUCGCAGAGCAGGCGc -3' miRNA: 3'- -ACGUGCCUGUCGAGCGUCUCGUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 2778 | 0.83 | 0.091578 |
Target: 5'- cGCgGCGGGCAGCacggCGCAGGGCAGGUa -3' miRNA: 3'- aCG-UGCCUGUCGa---GCGUCUCGUCCGc -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 128286 | 0.83 | 0.091578 |
Target: 5'- cGCgGCGGGCAGCacggCGCAGGGCAGGUa -3' miRNA: 3'- aCG-UGCCUGUCGa---GCGUCUCGUCCGc -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 4986 | 0.83 | 0.091578 |
Target: 5'- cGCGCGGGgGGCcgugcgcCGCAGGGCGGGCGg -3' miRNA: 3'- aCGUGCCUgUCGa------GCGUCUCGUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 94336 | 0.82 | 0.101644 |
Target: 5'- gUGUGCGGcGCGGCcugCGCGGGGCGGGCGg -3' miRNA: 3'- -ACGUGCC-UGUCGa--GCGUCUCGUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 109376 | 0.82 | 0.104319 |
Target: 5'- aUGCugGGuCGGCUCGCGGAgGCGGaGCGg -3' miRNA: 3'- -ACGugCCuGUCGAGCGUCU-CGUC-CGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 21155 | 0.81 | 0.112746 |
Target: 5'- cGC-CGGcgcGCAGCUCGCGGAGgAGGCGc -3' miRNA: 3'- aCGuGCC---UGUCGAGCGUCUCgUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 147450 | 0.8 | 0.128218 |
Target: 5'- gUGCGCGGACGGCUgGUcgcagaggggauAGAGCAgGGCGa -3' miRNA: 3'- -ACGUGCCUGUCGAgCG------------UCUCGU-CCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 140954 | 0.8 | 0.138071 |
Target: 5'- aGaCGCGGGCGuGCUCGCGGAGCgcgcgacAGGCGa -3' miRNA: 3'- aC-GUGCCUGU-CGAGCGUCUCG-------UCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 135899 | 0.8 | 0.141986 |
Target: 5'- gGCGgGGGCgcGGCUCGCAGAgggaccggaaGCAGGCGg -3' miRNA: 3'- aCGUgCCUG--UCGAGCGUCU----------CGUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 67788 | 0.79 | 0.149367 |
Target: 5'- gGCGCGGGCGGCUU-CGGGGgGGGCGg -3' miRNA: 3'- aCGUGCCUGUCGAGcGUCUCgUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 59603 | 0.79 | 0.153187 |
Target: 5'- gGCGCGGGCGgcGCUCGCgaaccGGGGguGGCGg -3' miRNA: 3'- aCGUGCCUGU--CGAGCG-----UCUCguCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 122232 | 0.78 | 0.178016 |
Target: 5'- gGCGCGGGgGGCUCggcgGCGGGGCgcGGGCGg -3' miRNA: 3'- aCGUGCCUgUCGAG----CGUCUCG--UCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 153133 | 0.78 | 0.178016 |
Target: 5'- gGCGCGGGgGGCUCggcgGCGGGGCgcGGGCGg -3' miRNA: 3'- aCGUGCCUgUCGAG----CGUCUCG--UCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 122948 | 0.78 | 0.182487 |
Target: 5'- gGaCACGG-CGGCgUUGCAGAGCGGGCa -3' miRNA: 3'- aC-GUGCCuGUCG-AGCGUCUCGUCCGc -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 153849 | 0.78 | 0.182487 |
Target: 5'- gGaCACGG-CGGCgUUGCAGAGCGGGCa -3' miRNA: 3'- aC-GUGCCuGUCG-AGCGUCUCGUCCGc -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 109714 | 0.78 | 0.187056 |
Target: 5'- cGCGCuGGCGGCcgCGCuGGGCAGGCGc -3' miRNA: 3'- aCGUGcCUGUCGa-GCGuCUCGUCCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 150372 | 0.78 | 0.191727 |
Target: 5'- gGCGCGaGACGGC-CGCGGGGCcgcGGCGg -3' miRNA: 3'- aCGUGC-CUGUCGaGCGUCUCGu--CCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 119471 | 0.78 | 0.191727 |
Target: 5'- gGCGCGaGACGGC-CGCGGGGCcgcGGCGg -3' miRNA: 3'- aCGUGC-CUGUCGaGCGUCUCGu--CCGC- -5' |
|||||||
21524 | 5' | -59.2 | NC_004812.1 | + | 13839 | 0.78 | 0.196499 |
Target: 5'- cGCGCGGGCAGCgggCGCccGGCGGGUa -3' miRNA: 3'- aCGUGCCUGUCGa--GCGucUCGUCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home