miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 41 0.68 0.668591
Target:  5'- cGCGCGGcgGGC-CGCGG-GCGcGGCGg -3'
miRNA:   3'- aCGUGCCugUCGaGCGUCuCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 565 0.71 0.490298
Target:  5'- gGCGCGcGCGGCcgCGUGGAGCcgcGGGCGc -3'
miRNA:   3'- aCGUGCcUGUCGa-GCGUCUCG---UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 1319 0.72 0.41789
Target:  5'- -cCGCGGGCGGUcCGCGGGcgguccGCGGGCGg -3'
miRNA:   3'- acGUGCCUGUCGaGCGUCU------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 1486 0.68 0.638367
Target:  5'- --gGCGGGCGGCg-GCGGAGCGccGGCc -3'
miRNA:   3'- acgUGCCUGUCGagCGUCUCGU--CCGc -5'
21524 5' -59.2 NC_004812.1 + 2149 0.68 0.618181
Target:  5'- -cCGCGGGCggGGCUCGCGGcGGCGgccaccuccacGGCGg -3'
miRNA:   3'- acGUGCCUG--UCGAGCGUC-UCGU-----------CCGC- -5'
21524 5' -59.2 NC_004812.1 + 2243 0.67 0.718273
Target:  5'- cGCGCGGcGCGGCg-GCGGGGUccGCGu -3'
miRNA:   3'- aCGUGCC-UGUCGagCGUCUCGucCGC- -5'
21524 5' -59.2 NC_004812.1 + 2324 0.72 0.41789
Target:  5'- cGCGCGcGCAGaaggcgCGCAGcGCGGGCGg -3'
miRNA:   3'- aCGUGCcUGUCga----GCGUCuCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 2416 0.69 0.577988
Target:  5'- gGCGCGGcCAGCccccagcgcgCGCAGGcGCGGuGCGa -3'
miRNA:   3'- aCGUGCCuGUCGa---------GCGUCU-CGUC-CGC- -5'
21524 5' -59.2 NC_004812.1 + 2483 0.74 0.329756
Target:  5'- cGCcgGCGGcgGCGGcCUCGCGG-GCGGGCGa -3'
miRNA:   3'- aCG--UGCC--UGUC-GAGCGUCuCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 2533 0.74 0.30405
Target:  5'- aGCGCGGGCAGCacggCGCGGcgguacucgcgcggcGGCAGGgGc -3'
miRNA:   3'- aCGUGCCUGUCGa---GCGUC---------------UCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 2639 0.68 0.672606
Target:  5'- gGCGCGG-CGGCggCGCGuccggguagaggcgcGcGCAGGCGg -3'
miRNA:   3'- aCGUGCCuGUCGa-GCGU---------------CuCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 2733 0.72 0.426588
Target:  5'- gGCGCGGcGCAGgUCGCGcgcGGCGGGCc -3'
miRNA:   3'- aCGUGCC-UGUCgAGCGUc--UCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 2778 0.83 0.091578
Target:  5'- cGCgGCGGGCAGCacggCGCAGGGCAGGUa -3'
miRNA:   3'- aCG-UGCCUGUCGa---GCGUCUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 3083 0.66 0.76616
Target:  5'- cGCGuCGGuccaGGCggGCGGGGCGGGgGa -3'
miRNA:   3'- aCGU-GCCug--UCGagCGUCUCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 3130 0.71 0.490298
Target:  5'- cGC-CGGGCAGCggcgCGUAGAGCAccaGCa -3'
miRNA:   3'- aCGuGCCUGUCGa---GCGUCUCGUc--CGc -5'
21524 5' -59.2 NC_004812.1 + 3203 0.7 0.528631
Target:  5'- gGCGCGGcGCAGCgggcccgaggCGCGcGGCGGGCc -3'
miRNA:   3'- aCGUGCC-UGUCGa---------GCGUcUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 3258 0.67 0.708445
Target:  5'- gGCuCGGGCgGGC-CGCAGcGCGcGGCGa -3'
miRNA:   3'- aCGuGCCUG-UCGaGCGUCuCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 3298 0.69 0.556111
Target:  5'- cGCGCGGgucgaaggcgagcGCGGCgCGCcaggccucggggaAGAGCGGGUGg -3'
miRNA:   3'- aCGUGCC-------------UGUCGaGCG-------------UCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 3370 0.66 0.775425
Target:  5'- cGCGCGGggcGCAGUagGCcucgAGGGC-GGCGg -3'
miRNA:   3'- aCGUGCC---UGUCGagCG----UCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 3489 0.7 0.528631
Target:  5'- aGCGCGGcgGGC-CGCGGGcGCGGGCc -3'
miRNA:   3'- aCGUGCCugUCGaGCGUCU-CGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.