miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 105670 0.74 0.321735
Target:  5'- gGgACGGGCGGC-CGCGGAguuccggguuuucGCGGGCGu -3'
miRNA:   3'- aCgUGCCUGUCGaGCGUCU-------------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 81731 0.77 0.221939
Target:  5'- gUGCACGaucgcguGCAGCUCGCGGAGCAGcuGCu -3'
miRNA:   3'- -ACGUGCc------UGUCGAGCGUCUCGUC--CGc -5'
21524 5' -59.2 NC_004812.1 + 121680 0.76 0.232877
Target:  5'- aGCgGCGGGCGGCgcgagaggaCGCGGAGgAGGCGg -3'
miRNA:   3'- aCG-UGCCUGUCGa--------GCGUCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 98394 0.76 0.256112
Target:  5'- gGCGCGG-CGGC-CGCGGGGC-GGCGc -3'
miRNA:   3'- aCGUGCCuGUCGaGCGUCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 154868 0.76 0.256112
Target:  5'- gGCGCGGGCucgggccgcggaGGCgCGCGGGGCcGGGCGg -3'
miRNA:   3'- aCGUGCCUG------------UCGaGCGUCUCG-UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 155744 0.76 0.262209
Target:  5'- cGCGCGGGCggGGCUCGCGGccGCGGGg- -3'
miRNA:   3'- aCGUGCCUG--UCGAGCGUCu-CGUCCgc -5'
21524 5' -59.2 NC_004812.1 + 128041 0.74 0.30405
Target:  5'- aGCGCGGGCAGCacggCGCGGcgguacucgcgcggcGGCAGGgGc -3'
miRNA:   3'- aCGUGCCUGUCGa---GCGUC---------------UCGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 71219 0.74 0.315281
Target:  5'- gGCgaGCGGGCGGC-CGCgAGGGCGcGGCGg -3'
miRNA:   3'- aCG--UGCCUGUCGaGCG-UCUCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 39274 0.74 0.315281
Target:  5'- cUGCAUGGGCAGCa-GCAGcGCcagGGGCGg -3'
miRNA:   3'- -ACGUGCCUGUCGagCGUCuCG---UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 101430 0.77 0.210928
Target:  5'- cGguCGGugAGCUCGCGGAGCGcguccccGGUGa -3'
miRNA:   3'- aCguGCCugUCGAGCGUCUCGU-------CCGC- -5'
21524 5' -59.2 NC_004812.1 + 119471 0.78 0.191727
Target:  5'- gGCGCGaGACGGC-CGCGGGGCcgcGGCGg -3'
miRNA:   3'- aCGUGC-CUGUCGaGCGUCUCGu--CCGC- -5'
21524 5' -59.2 NC_004812.1 + 122948 0.78 0.182487
Target:  5'- gGaCACGG-CGGCgUUGCAGAGCGGGCa -3'
miRNA:   3'- aC-GUGCCuGUCG-AGCGUCUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 4986 0.83 0.091578
Target:  5'- cGCGCGGGgGGCcgugcgcCGCAGGGCGGGCGg -3'
miRNA:   3'- aCGUGCCUgUCGa------GCGUCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 109376 0.82 0.104319
Target:  5'- aUGCugGGuCGGCUCGCGGAgGCGGaGCGg -3'
miRNA:   3'- -ACGugCCuGUCGAGCGUCU-CGUC-CGC- -5'
21524 5' -59.2 NC_004812.1 + 21155 0.81 0.112746
Target:  5'- cGC-CGGcgcGCAGCUCGCGGAGgAGGCGc -3'
miRNA:   3'- aCGuGCC---UGUCGAGCGUCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 147450 0.8 0.128218
Target:  5'- gUGCGCGGACGGCUgGUcgcagaggggauAGAGCAgGGCGa -3'
miRNA:   3'- -ACGUGCCUGUCGAgCG------------UCUCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 135899 0.8 0.141986
Target:  5'- gGCGgGGGCgcGGCUCGCAGAgggaccggaaGCAGGCGg -3'
miRNA:   3'- aCGUgCCUG--UCGAGCGUCU----------CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 67788 0.79 0.149367
Target:  5'- gGCGCGGGCGGCUU-CGGGGgGGGCGg -3'
miRNA:   3'- aCGUGCCUGUCGAGcGUCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 59603 0.79 0.153187
Target:  5'- gGCGCGGGCGgcGCUCGCgaaccGGGGguGGCGg -3'
miRNA:   3'- aCGUGCCUGU--CGAGCG-----UCUCguCCGC- -5'
21524 5' -59.2 NC_004812.1 + 122232 0.78 0.178016
Target:  5'- gGCGCGGGgGGCUCggcgGCGGGGCgcGGGCGg -3'
miRNA:   3'- aCGUGCCUgUCGAG----CGUCUCG--UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.