miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 3545 0.7 0.527658
Target:  5'- gGCGcCGGGcCGGCUCuucuugcgcgccgGCGG-GCAGGCGg -3'
miRNA:   3'- aCGU-GCCU-GUCGAG-------------CGUCuCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 3739 0.7 0.538392
Target:  5'- gGCGCGGGCcGCgCGcCAGcAGCGGcGCGg -3'
miRNA:   3'- aCGUGCCUGuCGaGC-GUC-UCGUC-CGC- -5'
21524 5' -59.2 NC_004812.1 + 3875 0.74 0.322458
Target:  5'- cGUGCGGcGCAGCUCGCgcagccagAGGcGCGGGCGc -3'
miRNA:   3'- aCGUGCC-UGUCGAGCG--------UCU-CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 3915 0.68 0.658534
Target:  5'- gGCGCGG-CGGCggggccgCGCGGcggcGGCAcGGCGc -3'
miRNA:   3'- aCGUGCCuGUCGa------GCGUC----UCGU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 4536 0.72 0.426588
Target:  5'- cGCGCGGguucuGCAGCcagcccauggccUCGCggucgggcgcgaAGAGCAGGCGc -3'
miRNA:   3'- aCGUGCC-----UGUCG------------AGCG------------UCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 4651 0.68 0.658534
Target:  5'- cGCGCcGGCGGcCUCGUAGcGCcGGCGc -3'
miRNA:   3'- aCGUGcCUGUC-GAGCGUCuCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 4706 0.67 0.705484
Target:  5'- aGCccCGGGCGGCUgucgcccaggccgcCGUAGAGCacgcgccccggGGGCGg -3'
miRNA:   3'- aCGu-GCCUGUCGA--------------GCGUCUCG-----------UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 4765 0.66 0.743468
Target:  5'- gGCGcCGGGCcacggcucgccgcuGGCguacccgUCGCGGuAGCGGGCGu -3'
miRNA:   3'- aCGU-GCCUG--------------UCG-------AGCGUC-UCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 4958 0.68 0.658534
Target:  5'- gGCcgGCGGGCGGC-CgGCGGcGGCgAGGCGg -3'
miRNA:   3'- aCG--UGCCUGUCGaG-CGUC-UCG-UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 4986 0.83 0.091578
Target:  5'- cGCGCGGGgGGCcgugcgcCGCAGGGCGGGCGg -3'
miRNA:   3'- aCGUGCCUgUCGa------GCGUCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 5023 0.68 0.618181
Target:  5'- gGCAggugGGGCGGCagGCGGGGCAGcGCc -3'
miRNA:   3'- aCGUg---CCUGUCGagCGUCUCGUC-CGc -5'
21524 5' -59.2 NC_004812.1 + 5473 0.7 0.509313
Target:  5'- aGCAgGGcCAGCUggCGCGGGGaCAcGGCGg -3'
miRNA:   3'- aCGUgCCuGUCGA--GCGUCUC-GU-CCGC- -5'
21524 5' -59.2 NC_004812.1 + 5502 0.68 0.648457
Target:  5'- gGCgGCGG-CGGC-CGCGGGGaAGGCGu -3'
miRNA:   3'- aCG-UGCCuGUCGaGCGUCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 5764 0.69 0.598036
Target:  5'- -aCAgGGACAGCgucagcagCGCGGGGUcGGCGc -3'
miRNA:   3'- acGUgCCUGUCGa-------GCGUCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 5821 0.69 0.598036
Target:  5'- gGCGCGGcgGGCUCuGCGG-GCcGGCGg -3'
miRNA:   3'- aCGUGCCugUCGAG-CGUCuCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 5874 0.72 0.435392
Target:  5'- gGCGCGGGCcggGGggCGCGGGcGCGGGCu -3'
miRNA:   3'- aCGUGCCUG---UCgaGCGUCU-CGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 5911 0.72 0.408449
Target:  5'- cGC-CGGGCGGCagGCAGAccccgggGCAGGCc -3'
miRNA:   3'- aCGuGCCUGUCGagCGUCU-------CGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 6025 0.71 0.490298
Target:  5'- gGaCGCGGGCAGCgacugcgcgcCGUAGGGC-GGCGa -3'
miRNA:   3'- aC-GUGCCUGUCGa---------GCGUCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 6122 0.68 0.668591
Target:  5'- gGCgGCGGGCuGC-CGgGGAagGCGGGCGa -3'
miRNA:   3'- aCG-UGCCUGuCGaGCgUCU--CGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 6339 0.66 0.747291
Target:  5'- aGgAgGGGCAGCagGgGGcGGCAGGCGc -3'
miRNA:   3'- aCgUgCCUGUCGagCgUC-UCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.