miRNA display CGI


Results 21 - 40 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 4686 0.69 0.480402
Target:  5'- -cGgcgCCGAGGggaGCGCCCCcgGCCCgCCg -3'
miRNA:   3'- gaCacaGGCUCC---UGCGGGG--UGGGgGG- -5'
21531 5' -62.4 NC_004812.1 + 5054 0.72 0.349227
Target:  5'- ------gCGAGGGCGCCgCGCCCCCg -3'
miRNA:   3'- gacacagGCUCCUGCGGgGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 5397 0.67 0.611931
Target:  5'- -cGgggCCGGGGGCGUCgCCGgCCCCg -3'
miRNA:   3'- gaCacaGGCUCCUGCGG-GGUgGGGGg -5'
21531 5' -62.4 NC_004812.1 + 7165 0.66 0.631296
Target:  5'- uCUGUucucGUCUG-GGACGuguCCCCucucGCCCCCUu -3'
miRNA:   3'- -GACA----CAGGCuCCUGC---GGGG----UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 7442 0.68 0.535486
Target:  5'- ---cGaCCGGGGACGCC--GCCCCUCg -3'
miRNA:   3'- gacaCaGGCUCCUGCGGggUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 7501 0.68 0.563862
Target:  5'- ---cGaCCG-GGGCGCCCaACCCCCg -3'
miRNA:   3'- gacaCaGGCuCCUGCGGGgUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 7560 0.68 0.563862
Target:  5'- -gGgcgCgGGGGGCgGUCCCGCCCCCa -3'
miRNA:   3'- gaCacaGgCUCCUG-CGGGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 7744 0.74 0.268896
Target:  5'- -aGg--CCGGGGGCGCCCgccuCCCCCCc -3'
miRNA:   3'- gaCacaGGCUCCUGCGGGgu--GGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 7998 0.68 0.516849
Target:  5'- ---gGUCagGGGGGCGCuCCCGCgaCCCCg -3'
miRNA:   3'- gacaCAGg-CUCCUGCG-GGGUGg-GGGG- -5'
21531 5' -62.4 NC_004812.1 + 8393 0.66 0.650663
Target:  5'- ---gGUCCGGGGGCGCggcgggggCUCGgCCCCg -3'
miRNA:   3'- gacaCAGGCUCCUGCG--------GGGUgGGGGg -5'
21531 5' -62.4 NC_004812.1 + 8594 0.67 0.583
Target:  5'- -gGUGgcgcgCCGcccGGAgGCCgCGCCUCCCg -3'
miRNA:   3'- gaCACa----GGCu--CCUgCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 8696 0.7 0.411593
Target:  5'- cCUGcGaCgGcGGGACGCCCUccgcGCCCCCCu -3'
miRNA:   3'- -GACaCaGgC-UCCUGCGGGG----UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 9388 0.67 0.583001
Target:  5'- -cGUGgCCGcgcuGGCGCCCCGCCUacagaCCCa -3'
miRNA:   3'- gaCACaGGCuc--CUGCGGGGUGGG-----GGG- -5'
21531 5' -62.4 NC_004812.1 + 10653 0.68 0.563862
Target:  5'- ---aGcCCGAGGGUGCCCCGCaCCCa -3'
miRNA:   3'- gacaCaGGCUCCUGCGGGGUGgGGGg -5'
21531 5' -62.4 NC_004812.1 + 10822 0.66 0.688224
Target:  5'- ---aGcCCGAGG-CGCUCgcgcugcuuccggCACCCCCCc -3'
miRNA:   3'- gacaCaGGCUCCuGCGGG-------------GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 12724 0.68 0.54395
Target:  5'- -gGUG-CCGAacGGCGCCCCcucgaacGCCuCCCCg -3'
miRNA:   3'- gaCACaGGCUc-CUGCGGGG-------UGG-GGGG- -5'
21531 5' -62.4 NC_004812.1 + 14126 0.67 0.583
Target:  5'- -cGUGaacgCCGccagccgcgucAGGGCGCCCuCGCCcagCCCCa -3'
miRNA:   3'- gaCACa---GGC-----------UCCUGCGGG-GUGG---GGGG- -5'
21531 5' -62.4 NC_004812.1 + 14758 0.67 0.60613
Target:  5'- gCUGc-UCCGGGGGCGacgacacgcucgcguCCCCGCCgaCCCg -3'
miRNA:   3'- -GACacAGGCUCCUGC---------------GGGGUGGg-GGG- -5'
21531 5' -62.4 NC_004812.1 + 14805 0.67 0.583
Target:  5'- aUGg--CCGAGcGgcacccccgcGCGgCCCGCCCCCCc -3'
miRNA:   3'- gACacaGGCUC-C----------UGCgGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 15169 0.67 0.611931
Target:  5'- -aGUGUaCGAcacGuGGCGCgCCGCCCUCCg -3'
miRNA:   3'- gaCACAgGCU---C-CUGCGgGGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.