miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 390 0.75 0.204147
Target:  5'- -----cCCGcGG-CGCCCCGCCCCCCa -3'
miRNA:   3'- gacacaGGCuCCuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 717 0.66 0.640983
Target:  5'- ---aGcCCGGGcGCcgGCCCCGCCCCUCc -3'
miRNA:   3'- gacaCaGGCUCcUG--CGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 773 0.71 0.354407
Target:  5'- ---cGUCUGAGGGCcccgcgggagauggGCCgCCGCCCCCg -3'
miRNA:   3'- gacaCAGGCUCCUG--------------CGG-GGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 831 0.7 0.436694
Target:  5'- -gGUGUCCGAcgcccGGAgGgCCCCGCgcgugUCCCCg -3'
miRNA:   3'- gaCACAGGCU-----CCUgC-GGGGUG-----GGGGG- -5'
21531 5' -62.4 NC_004812.1 + 881 0.67 0.573412
Target:  5'- ---cGcCCGcGcGCGCCCCccACCCCCCa -3'
miRNA:   3'- gacaCaGGCuCcUGCGGGG--UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 956 0.66 0.640983
Target:  5'- gCUGUGgaggCCuaGGGGagcccgGCGUgCCCGCCCCCg -3'
miRNA:   3'- -GACACa---GG--CUCC------UGCG-GGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 1002 0.71 0.359642
Target:  5'- cCUGgggGUCCGGGGuCGCCCCcauugacgucacgcgGCUacaaCCCCg -3'
miRNA:   3'- -GACa--CAGGCUCCuGCGGGG---------------UGG----GGGG- -5'
21531 5' -62.4 NC_004812.1 + 1044 0.67 0.602266
Target:  5'- ---cGcCCGcGcGCGCCCCuCCCCCCu -3'
miRNA:   3'- gacaCaGGCuCcUGCGGGGuGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 1319 0.67 0.583001
Target:  5'- -----cCCGGGccccgccGCGCCCCGCCCCUCc -3'
miRNA:   3'- gacacaGGCUCc------UGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 1526 0.67 0.573412
Target:  5'- ------gCGAGGGCaugccGCCgCCGCCCCCCc -3'
miRNA:   3'- gacacagGCUCCUG-----CGG-GGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 1770 0.68 0.554353
Target:  5'- aUGcGUCCcucgGGGGGCcggccGCUCCGCCCCgCCg -3'
miRNA:   3'- gACaCAGG----CUCCUG-----CGGGGUGGGG-GG- -5'
21531 5' -62.4 NC_004812.1 + 1930 0.67 0.583
Target:  5'- ----cUCCGgccGGGGCGCUCCGCCCgUCg -3'
miRNA:   3'- gacacAGGC---UCCUGCGGGGUGGGgGG- -5'
21531 5' -62.4 NC_004812.1 + 2135 0.66 0.640983
Target:  5'- ---aGUCCGGGGAgGCCCCGCgggcggggCUCgCg -3'
miRNA:   3'- gacaCAGGCUCCUgCGGGGUG--------GGGgG- -5'
21531 5' -62.4 NC_004812.1 + 2166 0.67 0.59262
Target:  5'- ---cGcCCcGGGACGCCCgGCCCgaaCCCa -3'
miRNA:   3'- gacaCaGGcUCCUGCGGGgUGGG---GGG- -5'
21531 5' -62.4 NC_004812.1 + 3136 0.66 0.689181
Target:  5'- -gGUGU-CGcGGcCGCCgCGCUCCCCu -3'
miRNA:   3'- gaCACAgGCuCCuGCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 3246 0.72 0.349227
Target:  5'- ---cGcCCGccaGGGGCGCCCgCGCCCCCg -3'
miRNA:   3'- gacaCaGGC---UCCUGCGGG-GUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 3334 0.73 0.274367
Target:  5'- ---gGcCCGAGGggccgccGCGCCCCGCgCCCCg -3'
miRNA:   3'- gacaCaGGCUCC-------UGCGGGGUGgGGGG- -5'
21531 5' -62.4 NC_004812.1 + 3451 0.7 0.453909
Target:  5'- -cGUGguccCCGuGGccccccgcccGCGCCCCgccgccgaGCCCCCCg -3'
miRNA:   3'- gaCACa---GGCuCC----------UGCGGGG--------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 3506 0.66 0.679597
Target:  5'- -----cCCGGGGcgGCGCCCagacaGCCCgCCCa -3'
miRNA:   3'- gacacaGGCUCC--UGCGGGg----UGGG-GGG- -5'
21531 5' -62.4 NC_004812.1 + 4188 0.78 0.146093
Target:  5'- -cGUGgacgCCGAGGGCGCCCCcgcggcGCCcggCCCCa -3'
miRNA:   3'- gaCACa---GGCUCCUGCGGGG------UGG---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.