miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 40993 1.1 0.000773
Target:  5'- uCUGUGUCCGAGGACGCCCCACCCCCCu -3'
miRNA:   3'- -GACACAGGCUCCUGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 119410 0.79 0.126153
Target:  5'- -cGUGcCCGGGGGCGCCgCuCCCCCUg -3'
miRNA:   3'- gaCACaGGCUCCUGCGGgGuGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 150311 0.79 0.126154
Target:  5'- -cGUGcCCGGGGGCGCCgCuCCCCCUg -3'
miRNA:   3'- gaCACaGGCUCCUGCGGgGuGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 35089 0.78 0.146093
Target:  5'- -cGUGgacgCCGAGGGCGCCCCcgcggcGCCcggCCCCa -3'
miRNA:   3'- gaCACa---GGCUCCUGCGGGG------UGG---GGGG- -5'
21531 5' -62.4 NC_004812.1 + 4188 0.78 0.146093
Target:  5'- -cGUGgacgCCGAGGGCGCCCCcgcggcGCCcggCCCCa -3'
miRNA:   3'- gaCACa---GGCUCCUGCGGGG------UGG---GGGG- -5'
21531 5' -62.4 NC_004812.1 + 78847 0.77 0.166454
Target:  5'- -gGUGUCCcccgaggagcccgggGAGGGCGgaggccgcCCCCACCCCCUg -3'
miRNA:   3'- gaCACAGG---------------CUCCUGC--------GGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 47085 0.77 0.168867
Target:  5'- ---cG-CCGGGGGCGCCUCGgCCCCCg -3'
miRNA:   3'- gacaCaGGCUCCUGCGGGGUgGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 84132 0.76 0.177139
Target:  5'- -----cCCGAGG-CGCCgCCGCCCCCCu -3'
miRNA:   3'- gacacaGGCUCCuGCGG-GGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 84242 0.76 0.18577
Target:  5'- gCUGgcGUCCGAcGACGCgggagacccCCCGCCCCCCc -3'
miRNA:   3'- -GACa-CAGGCUcCUGCG---------GGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 63935 0.76 0.190222
Target:  5'- aCUG-GaUC-AGGACGCCCCGCUCCCCg -3'
miRNA:   3'- -GACaCaGGcUCCUGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 137447 0.76 0.194769
Target:  5'- -gGUuUCUGGGGGCGCCgCCgccgcGCCCCCCg -3'
miRNA:   3'- gaCAcAGGCUCCUGCGG-GG-----UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 35360 0.76 0.19941
Target:  5'- -gGUGUCCG-GGGCGa--CGCCCCCCg -3'
miRNA:   3'- gaCACAGGCuCCUGCgggGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 31291 0.75 0.204147
Target:  5'- -----cCCGcGG-CGCCCCGCCCCCCa -3'
miRNA:   3'- gacacaGGCuCCuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 390 0.75 0.204147
Target:  5'- -----cCCGcGG-CGCCCCGCCCCCCa -3'
miRNA:   3'- gacacaGGCuCCuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 138130 0.75 0.208493
Target:  5'- cCUGUGUCUGGgccccgcGGGCGCggggCCgCGCCCCCCc -3'
miRNA:   3'- -GACACAGGCU-------CCUGCG----GG-GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 134602 0.75 0.213914
Target:  5'- -cGUGUCugacguuggggaCGAGGGCggcauccugGCCCUGCCCCCCu -3'
miRNA:   3'- gaCACAG------------GCUCCUG---------CGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 27913 0.75 0.213914
Target:  5'- ---gGUCgGGgagaccGGGCGCCCCGCCUCCCg -3'
miRNA:   3'- gacaCAGgCU------CCUGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 119779 0.75 0.234652
Target:  5'- cCUGUGcCCGGGGGCcuGCCCCggggucugccuGCCgCCCg -3'
miRNA:   3'- -GACACaGGCUCCUG--CGGGG-----------UGGgGGG- -5'
21531 5' -62.4 NC_004812.1 + 55921 0.74 0.245641
Target:  5'- uCUG-GUCCucuggcGAGGugGCCUgGCCCCCg -3'
miRNA:   3'- -GACaCAGG------CUCCugCGGGgUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 84034 0.74 0.251294
Target:  5'- -cGUuUCCGGGGGCGCCgguacaccggCGCCCCCCc -3'
miRNA:   3'- gaCAcAGGCUCCUGCGGg---------GUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.