miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 106248 0.66 0.640982
Target:  5'- -cGgcgUCGGGGGCGCCCUACCgcguggCCCUc -3'
miRNA:   3'- gaCacaGGCUCCUGCGGGGUGG------GGGG- -5'
21531 5' -62.4 NC_004812.1 + 42278 0.66 0.650663
Target:  5'- --cUGUUCGGuagcgcGGGCGCCCCGCgUCCg -3'
miRNA:   3'- gacACAGGCU------CCUGCGGGGUGgGGGg -5'
21531 5' -62.4 NC_004812.1 + 92305 0.66 0.631296
Target:  5'- ---cGUCgGccccGGuCGCCCCGCCgCCCg -3'
miRNA:   3'- gacaCAGgCu---CCuGCGGGGUGGgGGG- -5'
21531 5' -62.4 NC_004812.1 + 51352 0.66 0.640982
Target:  5'- -aGUcgCCGGGGAgcCGCCCgCGCCCCa- -3'
miRNA:   3'- gaCAcaGGCUCCU--GCGGG-GUGGGGgg -5'
21531 5' -62.4 NC_004812.1 + 57999 0.66 0.640982
Target:  5'- gCUGg--CCaccGACGCCCCGCCCUCg -3'
miRNA:   3'- -GACacaGGcucCUGCGGGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 65478 0.66 0.640982
Target:  5'- ---cGUCCcc-GACcgGCCCCGCCCCCa -3'
miRNA:   3'- gacaCAGGcucCUG--CGGGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 127644 0.66 0.640982
Target:  5'- ---aGUCCGGGGAgGCCCCGCgggcggggCUCgCg -3'
miRNA:   3'- gacaCAGGCUCCUgCGGGGUG--------GGGgG- -5'
21531 5' -62.4 NC_004812.1 + 34037 0.66 0.689182
Target:  5'- -gGUGU-CGcGGcCGCCgCGCUCCCCu -3'
miRNA:   3'- gaCACAgGCuCCuGCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 30109 0.66 0.650663
Target:  5'- -cGUGgggCUGcGGGGCGCacguCCCGCagCCCCCg -3'
miRNA:   3'- gaCACa--GGC-UCCUGCG----GGGUG--GGGGG- -5'
21531 5' -62.4 NC_004812.1 + 142059 0.66 0.631296
Target:  5'- -----cCCGGGcGACGagCCCGCCCCCg -3'
miRNA:   3'- gacacaGGCUC-CUGCg-GGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 126225 0.66 0.640982
Target:  5'- ---aGcCCGGGcGCcgGCCCCGCCCCUCc -3'
miRNA:   3'- gacaCaGGCUCcUG--CGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 120314 0.66 0.631296
Target:  5'- ---cGUCCcuGGGaGAC-CCCgACCCCCCu -3'
miRNA:   3'- gacaCAGG--CUC-CUGcGGGgUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 126464 0.66 0.640982
Target:  5'- gCUGUGgaggCCuaGGGGagcccgGCGUgCCCGCCCCCg -3'
miRNA:   3'- -GACACa---GG--CUCC------UGCG-GGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 95782 0.66 0.640014
Target:  5'- -cGUGgagCCGGGGGCGgUgcuggugaagugaCCGCCCCgCCc -3'
miRNA:   3'- gaCACa--GGCUCCUGCgG-------------GGUGGGG-GG- -5'
21531 5' -62.4 NC_004812.1 + 62608 0.66 0.650663
Target:  5'- -cGg--CCGGuuucuGGACGCCaUCACCCCCUc -3'
miRNA:   3'- gaCacaGGCU-----CCUGCGG-GGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 106910 0.66 0.640014
Target:  5'- ---gGUCCGAc-GCGCUCCccuggguGCCCCCCg -3'
miRNA:   3'- gacaCAGGCUccUGCGGGG-------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 8393 0.66 0.650663
Target:  5'- ---gGUCCGGGGGCGCggcgggggCUCGgCCCCg -3'
miRNA:   3'- gacaCAGGCUCCUGCG--------GGGUgGGGGg -5'
21531 5' -62.4 NC_004812.1 + 74438 0.66 0.650663
Target:  5'- -gGUGUUggaCGAGGGC-CCgCGCgCCCCg -3'
miRNA:   3'- gaCACAG---GCUCCUGcGGgGUGgGGGG- -5'
21531 5' -62.4 NC_004812.1 + 70937 0.66 0.640982
Target:  5'- uCUGccGUCgGGGGAcCGCaaCCCGCCCCg- -3'
miRNA:   3'- -GACa-CAGgCUCCU-GCG--GGGUGGGGgg -5'
21531 5' -62.4 NC_004812.1 + 80316 0.66 0.638077
Target:  5'- -aGgg-CCaGGGugGCCCCACgcguguuuaugcgaCCCCCg -3'
miRNA:   3'- gaCacaGGcUCCugCGGGGUG--------------GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.