miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 102461 0.72 0.313807
Target:  5'- -cGUGUCCcgccgccGGGAgccCaCCCCACCCCCCu -3'
miRNA:   3'- gaCACAGGc------UCCU---GcGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 7744 0.74 0.268896
Target:  5'- -aGg--CCGGGGGCGCCCgccuCCCCCCc -3'
miRNA:   3'- gaCacaGGCUCCUGCGGGgu--GGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 65399 0.74 0.268896
Target:  5'- ----cUCCGcgagcuGGACGCCgCGCCCCCCg -3'
miRNA:   3'- gacacAGGCu-----CCUGCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 3334 0.73 0.274367
Target:  5'- ---gGcCCGAGGggccgccGCGCCCCGCgCCCCg -3'
miRNA:   3'- gacaCaGGCUCC-------UGCGGGGUGgGGGG- -5'
21531 5' -62.4 NC_004812.1 + 76525 0.73 0.281174
Target:  5'- -gGUGUCggCGAGGACGCCCUgggcccggacgGCCgCCUCg -3'
miRNA:   3'- gaCACAG--GCUCCUGCGGGG-----------UGG-GGGG- -5'
21531 5' -62.4 NC_004812.1 + 107103 0.73 0.281174
Target:  5'- -cGUGUgaCGAGGcCGUCCCACCCCa- -3'
miRNA:   3'- gaCACAg-GCUCCuGCGGGGUGGGGgg -5'
21531 5' -62.4 NC_004812.1 + 92401 0.73 0.287479
Target:  5'- -cGUG-CCGgccGGGcCGCCCgaCACCCCCCa -3'
miRNA:   3'- gaCACaGGC---UCCuGCGGG--GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 50902 0.73 0.307058
Target:  5'- -gGUGUUCGGGGccccgGCCCCGCCaCCCg -3'
miRNA:   3'- gaCACAGGCUCCug---CGGGGUGGgGGG- -5'
21531 5' -62.4 NC_004812.1 + 139573 0.72 0.31177
Target:  5'- -----aCCGAGG-CGCCCCccgccgaccccuucACCCCCCg -3'
miRNA:   3'- gacacaGGCUCCuGCGGGG--------------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 73230 0.74 0.268896
Target:  5'- cCUGcggGUCgGGcGGGCGgCCCGCCCCCa -3'
miRNA:   3'- -GACa--CAGgCU-CCUGCgGGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 121073 0.74 0.26292
Target:  5'- -----cCCGcgcGGGCGUCCCGCCCCCCc -3'
miRNA:   3'- gacacaGGCu--CCUGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 119965 0.74 0.257053
Target:  5'- cCUGUGggcCUGGGcGGCGCCCggCGCCCUCCu -3'
miRNA:   3'- -GACACa--GGCUC-CUGCGGG--GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 4188 0.78 0.146093
Target:  5'- -cGUGgacgCCGAGGGCGCCCCcgcggcGCCcggCCCCa -3'
miRNA:   3'- gaCACa---GGCUCCUGCGGGG------UGG---GGGG- -5'
21531 5' -62.4 NC_004812.1 + 35360 0.76 0.19941
Target:  5'- -gGUGUCCG-GGGCGa--CGCCCCCCg -3'
miRNA:   3'- gaCACAGGCuCCUGCgggGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 390 0.75 0.204147
Target:  5'- -----cCCGcGG-CGCCCCGCCCCCCa -3'
miRNA:   3'- gacacaGGCuCCuGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 138130 0.75 0.208493
Target:  5'- cCUGUGUCUGGgccccgcGGGCGCggggCCgCGCCCCCCc -3'
miRNA:   3'- -GACACAGGCU-------CCUGCG----GG-GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 27913 0.75 0.213914
Target:  5'- ---gGUCgGGgagaccGGGCGCCCCGCCUCCCg -3'
miRNA:   3'- gacaCAGgCU------CCUGCGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 134602 0.75 0.213914
Target:  5'- -cGUGUCugacguuggggaCGAGGGCggcauccugGCCCUGCCCCCCu -3'
miRNA:   3'- gaCACAG------------GCUCCUG---------CGGGGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 119779 0.75 0.234652
Target:  5'- cCUGUGcCCGGGGGCcuGCCCCggggucugccuGCCgCCCg -3'
miRNA:   3'- -GACACaGGCUCCUG--CGGGG-----------UGGgGGG- -5'
21531 5' -62.4 NC_004812.1 + 55921 0.74 0.245641
Target:  5'- uCUG-GUCCucuggcGAGGugGCCUgGCCCCCg -3'
miRNA:   3'- -GACaCAGG------CUCCugCGGGgUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.