miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 249 0.69 0.615736
Target:  5'- ------gCUCUCCUCCCCCcCCCCc- -3'
miRNA:   3'- gaaagaaGGGAGGAGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 289 0.69 0.605686
Target:  5'- ------cCCCUCggCCCCCUCCCgUCc -3'
miRNA:   3'- gaaagaaGGGAGgaGGGGGAGGGgAG- -5'
21533 3' -58.7 NC_004812.1 + 335 0.75 0.314234
Target:  5'- --cUCguccCCCUCCcgUCCCCCUCCCgUCc -3'
miRNA:   3'- gaaAGaa--GGGAGG--AGGGGGAGGGgAG- -5'
21533 3' -58.7 NC_004812.1 + 363 0.7 0.565745
Target:  5'- ------cCCCUCCcgUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaaGGGAGG--AGGGGGAGGGgag -5'
21533 3' -58.7 NC_004812.1 + 388 0.7 0.565745
Target:  5'- --cUCUccgUCUCUCC-CCCCCgUCCCUCu -3'
miRNA:   3'- gaaAGA---AGGGAGGaGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 425 0.79 0.191309
Target:  5'- ------cCCCUCC-CCCCCUCCCCUUc -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 906 0.68 0.705804
Target:  5'- ------aCCCcCCUCCCCCaCgCCCUCg -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGaG-GGGAG- -5'
21533 3' -58.7 NC_004812.1 + 1059 0.77 0.249424
Target:  5'- -----cUCCCcCCUCCCCCgCCCCUCc -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 1661 0.7 0.565745
Target:  5'- -----gUCCCcCCUCCCCCcCCCCcCg -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 1835 0.79 0.191309
Target:  5'- --cUCccCCCUCCUCCCCuCUCCCCg- -3'
miRNA:   3'- gaaAGaaGGGAGGAGGGG-GAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 3153 0.69 0.625798
Target:  5'- ---gCUcCCCUCCgCCCCC-CCCCg- -3'
miRNA:   3'- gaaaGAaGGGAGGaGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 3200 0.68 0.695926
Target:  5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3'
miRNA:   3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 4075 0.71 0.507286
Target:  5'- --gUCgUCCUcgUCCUCCCCCgcggCCCCg- -3'
miRNA:   3'- gaaAGaAGGG--AGGAGGGGGa---GGGGag -5'
21533 3' -58.7 NC_004812.1 + 4125 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21533 3' -58.7 NC_004812.1 + 5758 0.67 0.744628
Target:  5'- -------gCCUCCggCCCCUCUCCUCu -3'
miRNA:   3'- gaaagaagGGAGGagGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6157 0.74 0.358872
Target:  5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3'
miRNA:   3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5'
21533 3' -58.7 NC_004812.1 + 6207 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6233 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6259 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 6285 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.