miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 3' -58.7 NC_004812.1 + 131988 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131780 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131806 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131832 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131858 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131884 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131910 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131936 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131962 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131754 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 122595 0.78 0.196058
Target:  5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3'
miRNA:   3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 127343 0.79 0.191309
Target:  5'- --cUCccCCCUCCUCCCCuCUCCCCg- -3'
miRNA:   3'- gaaAGaaGGGAGGAGGGG-GAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 29629 0.92 0.02481
Target:  5'- -cUUCUcUCCCUCCUCCCCCUCCCCa- -3'
miRNA:   3'- gaAAGA-AGGGAGGAGGGGGAGGGGag -5'
21533 3' -58.7 NC_004812.1 + 150504 0.91 0.029172
Target:  5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3'
miRNA:   3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 131729 0.82 0.121687
Target:  5'- ---cCUUCCCUCC-CCCCUUCCCUUCc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 115872 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116010 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 116068 0.8 0.160814
Target:  5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5'
21533 3' -58.7 NC_004812.1 + 97609 0.79 0.16905
Target:  5'- ---cCUUCCCcCUUCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGAAGGGaGGAGGGGGAGGGGaG- -5'
21533 3' -58.7 NC_004812.1 + 125933 0.79 0.191309
Target:  5'- ------cCCCUCC-CCCCCUCCCCUUc -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.