miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 5' -59.1 NC_004812.1 + 91121 0.67 0.67751
Target:  5'- cGuGGGGUcgcUUGGGGGcGGGGccggucGGGGAc- -3'
miRNA:   3'- aC-CCCCA---AACCCCCuCCUU------CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 155161 0.68 0.667437
Target:  5'- aGGGcGGUcgUGGGGGcGGGGAccGGGGc-- -3'
miRNA:   3'- aCCC-CCAa-ACCCCC-UCCUU--CCCCuuu -5'
21533 5' -59.1 NC_004812.1 + 43071 0.68 0.667437
Target:  5'- cGGGGGcggUGGGGGuGc--GGGGAc- -3'
miRNA:   3'- aCCCCCaa-ACCCCCuCcuuCCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 124260 0.68 0.667437
Target:  5'- aGGGcGGUcgUGGGGGcGGGGAccGGGGc-- -3'
miRNA:   3'- aCCC-CCAa-ACCCCC-UCCUU--CCCCuuu -5'
21533 5' -59.1 NC_004812.1 + 36853 0.68 0.667437
Target:  5'- aGGGGGcagggcccGGGGAGGccgcGGGGGGGc -3'
miRNA:   3'- aCCCCCaaac----CCCCUCCu---UCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 5952 0.68 0.667437
Target:  5'- aGGGGGcagggcccGGGGAGGccgcGGGGGGGc -3'
miRNA:   3'- aCCCCCaaac----CCCCUCCu---UCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 123505 0.68 0.657334
Target:  5'- cGGGGGUcUGGGGucgggcgccGGGAGcgcggcGGGGAGGa -3'
miRNA:   3'- aCCCCCAaACCCCc--------UCCUU------CCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 11443 0.68 0.647213
Target:  5'- gGGaGGGUgccGGGaGccGGGAGGGGGAAAg -3'
miRNA:   3'- aCC-CCCAaacCCC-C--UCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 91594 0.68 0.647213
Target:  5'- cUGGGucgcgcgucGGaaaUGGGGGAcccGGggGGGGAGc -3'
miRNA:   3'- -ACCC---------CCaa-ACCCCCU---CCuuCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 36019 0.68 0.6462
Target:  5'- -uGGGGUccGGGGGGcgggcgcGGAGGcGGGAGGg -3'
miRNA:   3'- acCCCCAaaCCCCCU-------CCUUC-CCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 5118 0.68 0.6462
Target:  5'- -uGGGGUccGGGGGGcgggcgcGGAGGcGGGAGGg -3'
miRNA:   3'- acCCCCAaaCCCCCU-------CCUUC-CCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 6156 0.68 0.637079
Target:  5'- aGGGGGUcgGGGGccuGGGcGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAaaCCCC---CUC-CuuCCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 2240 0.68 0.637079
Target:  5'- gUGGGGGUcucGGGGGucucgGGGGucucGGGGGu- -3'
miRNA:   3'- -ACCCCCAaa-CCCCC-----UCCUu---CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 37057 0.68 0.637079
Target:  5'- aGGGGGUcgGGGGccuGGGcGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAaaCCCC---CUC-CuuCCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 105803 0.68 0.637079
Target:  5'- gGGGGGcUUGGGGGu---GGGGGc-- -3'
miRNA:   3'- aCCCCCaAACCCCCuccuUCCCCuuu -5'
21533 5' -59.1 NC_004812.1 + 33141 0.68 0.637079
Target:  5'- gUGGGGGUcucGGGGGucucGGGGGucucGGGGGu- -3'
miRNA:   3'- -ACCCCCAaa-CCCCC----UCCUU----CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 132265 0.68 0.626942
Target:  5'- cUGGGGGcgagggugugUGGuGGuGGGGggGGGGuAAGa -3'
miRNA:   3'- -ACCCCCaa--------ACC-CC-CUCCuuCCCC-UUU- -5'
21533 5' -59.1 NC_004812.1 + 31141 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 240 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 79416 0.69 0.605676
Target:  5'- cGGGGGccgccgcUUUGGGGGgcGGGGuuuGGGGu-- -3'
miRNA:   3'- aCCCCC-------AAACCCCC--UCCUu--CCCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.