Results 1 - 20 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21533 | 5' | -59.1 | NC_004812.1 | + | 150165 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149853 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149892 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149931 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149970 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 150009 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 150048 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 150087 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 150126 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149814 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 131587 | 0.82 | 0.097808 |
Target: 5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3' miRNA: 3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 122551 | 0.82 | 0.095281 |
Target: 5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3' miRNA: 3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 116233 | 0.91 | 0.02426 |
Target: 5'- aUGGGGGg--GGGGGGGGggGGGGAAc -3' miRNA: 3'- -ACCCCCaaaCCCCCUCCuuCCCCUUu -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 156355 | 0.91 | 0.024929 |
Target: 5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 137988 | 0.9 | 0.026323 |
Target: 5'- cGGGGGgg-GGGGGGGGggGGGGGAGc -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 131639 | 0.87 | 0.042861 |
Target: 5'- aGGGGGa--GGGGGAGGggGGGGggGu -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 6608 | 0.84 | 0.073196 |
Target: 5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3' miRNA: 3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 149639 | 0.84 | 0.073196 |
Target: 5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3' miRNA: 3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 116332 | 0.83 | 0.079248 |
Target: 5'- aUGGGGGg--GGGGGuguAGGGAGGGGggGg -3' miRNA: 3'- -ACCCCCaaaCCCCC---UCCUUCCCCuuU- -5' |
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21533 | 5' | -59.1 | NC_004812.1 | + | 54712 | 0.83 | 0.081369 |
Target: 5'- aGGGGGacgagGGGGGAgGGGAGGGGGAGg -3' miRNA: 3'- aCCCCCaaa--CCCCCU-CCUUCCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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