miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 5' -59.1 NC_004812.1 + 34 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21533 5' -59.1 NC_004812.1 + 240 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 823 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 865 0.71 0.451428
Target:  5'- cUGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- -ACCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 918 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 970 0.7 0.53673
Target:  5'- cGGGGGUccUGGGGGuccggggucgccGGGGuccuGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC------------UCCUu---CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 1975 0.75 0.279259
Target:  5'- cGGGGGgaggGGGGGAGGGGuGGcGGGu- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCUU-CC-CCUuu -5'
21533 5' -59.1 NC_004812.1 + 2053 0.67 0.687547
Target:  5'- cGGGGGgcgcGGGGGAGGggGc----- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5'
21533 5' -59.1 NC_004812.1 + 2240 0.68 0.637079
Target:  5'- gUGGGGGUcucGGGGGucucgGGGGucucGGGGGu- -3'
miRNA:   3'- -ACCCCCAaa-CCCCC-----UCCUu---CCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 2295 0.7 0.507565
Target:  5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5'
21533 5' -59.1 NC_004812.1 + 3100 0.79 0.155513
Target:  5'- gUGGGGGg--GaGGGGAGGggGaGGGAGu -3'
miRNA:   3'- -ACCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21533 5' -59.1 NC_004812.1 + 4631 0.67 0.704503
Target:  5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3'
miRNA:   3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5'
21533 5' -59.1 NC_004812.1 + 4774 0.71 0.451428
Target:  5'- cGGGcGcggUGGGGGAGGggGcGGGGc- -3'
miRNA:   3'- aCCCcCaa-ACCCCCUCCuuC-CCCUuu -5'
21533 5' -59.1 NC_004812.1 + 5081 0.72 0.436145
Target:  5'- cGGGGGgccgggguccggccGGGGAGGcGGGGGAGu -3'
miRNA:   3'- aCCCCCaaac----------CCCCUCCuUCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 5118 0.68 0.6462
Target:  5'- -uGGGGUccGGGGGGcgggcgcGGAGGcGGGAGGg -3'
miRNA:   3'- acCCCCAaaCCCCCU-------CCUUC-CCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 5272 0.66 0.733003
Target:  5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3'
miRNA:   3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5'
21533 5' -59.1 NC_004812.1 + 5684 0.7 0.495135
Target:  5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5'
21533 5' -59.1 NC_004812.1 + 5952 0.68 0.667437
Target:  5'- aGGGGGcagggcccGGGGAGGccgcGGGGGGGc -3'
miRNA:   3'- aCCCCCaaac----CCCCUCCu---UCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 5989 0.73 0.36448
Target:  5'- cGcGGGGUgguaggcgccgGGGGGcgagGGGAAGGGGGAc -3'
miRNA:   3'- aC-CCCCAaa---------CCCCC----UCCUUCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 6078 0.82 0.097808
Target:  5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3'
miRNA:   3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.