miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21533 5' -59.1 NC_004812.1 + 150165 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149853 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149892 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149931 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149970 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 150009 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 150048 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 150087 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 150126 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149814 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 131587 0.82 0.097808
Target:  5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3'
miRNA:   3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 122551 0.82 0.095281
Target:  5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3'
miRNA:   3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 116233 0.91 0.02426
Target:  5'- aUGGGGGg--GGGGGGGGggGGGGAAc -3'
miRNA:   3'- -ACCCCCaaaCCCCCUCCuuCCCCUUu -5'
21533 5' -59.1 NC_004812.1 + 156355 0.91 0.024929
Target:  5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 137988 0.9 0.026323
Target:  5'- cGGGGGgg-GGGGGGGGggGGGGGAGc -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 131639 0.87 0.042861
Target:  5'- aGGGGGa--GGGGGAGGggGGGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 6608 0.84 0.073196
Target:  5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3'
miRNA:   3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5'
21533 5' -59.1 NC_004812.1 + 149639 0.84 0.073196
Target:  5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3'
miRNA:   3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 116332 0.83 0.079248
Target:  5'- aUGGGGGg--GGGGGuguAGGGAGGGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCC---UCCUUCCCCuuU- -5'
21533 5' -59.1 NC_004812.1 + 54712 0.83 0.081369
Target:  5'- aGGGGGacgagGGGGGAgGGGAGGGGGAGg -3'
miRNA:   3'- aCCCCCaaa--CCCCCU-CCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.