miRNA display CGI


Results 21 - 40 of 612 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 989 0.66 0.863156
Target:  5'- gGGUcGCCGGGGuC-CugGggGuccgggguCGCCc -3'
miRNA:   3'- -CCA-CGGCCCCuGuGugCuuCu-------GCGGc -5'
21547 3' -58.3 NC_004812.1 + 114093 0.66 0.848103
Target:  5'- uGUGCCGGGG-CGgACGGauGGGCGg-- -3'
miRNA:   3'- cCACGGCCCCuGUgUGCU--UCUGCggc -5'
21547 3' -58.3 NC_004812.1 + 156313 0.66 0.848103
Target:  5'- aGGgagGgCGGGGG-ACGgGAGGGgGCCGa -3'
miRNA:   3'- -CCa--CgGCCCCUgUGUgCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 48909 0.66 0.863156
Target:  5'- gGGUGCuCGcGGGcCACGCcguGGuCGCCa -3'
miRNA:   3'- -CCACG-GC-CCCuGUGUGcu-UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98674 0.66 0.855725
Target:  5'- gGGUcgaGCCGGGGcGgGCGCGGucGAacCGCCGn -3'
miRNA:   3'- -CCA---CGGCCCC-UgUGUGCUu-CU--GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 74060 0.66 0.863156
Target:  5'- cGGgcgGCagCGGcGGGCGCGCGcGGGcCGCCu -3'
miRNA:   3'- -CCa--CG--GCC-CCUGUGUGCuUCU-GCGGc -5'
21547 3' -58.3 NC_004812.1 + 84044 0.66 0.848103
Target:  5'- uGGUGUCGGcGAUACcauggccggaACGGAGGgGCCc -3'
miRNA:   3'- -CCACGGCCcCUGUG----------UGCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 130256 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 129226 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 6532 0.66 0.863156
Target:  5'- gGGgggGCgGGGGGC-CGaGggGGCuGCCGc -3'
miRNA:   3'- -CCa--CGgCCCCUGuGUgCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 73442 0.66 0.848103
Target:  5'- ---uCCGGGGcCGCGCGccacGGCGCCa -3'
miRNA:   3'- ccacGGCCCCuGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 80834 0.66 0.832314
Target:  5'- --aGUCGGGGGCAC-CGugguGGUGCCGa -3'
miRNA:   3'- ccaCGGCCCCUGUGuGCuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 110178 0.66 0.862422
Target:  5'- gGGUGUcgacgaggaggCGGcguaccuGGACGCGCugcacGAGACGCCGa -3'
miRNA:   3'- -CCACG-----------GCC-------CCUGUGUGc----UUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 31486 0.66 0.855725
Target:  5'- -aUGCgGGGGGCcccCugGAGGGCGgCu -3'
miRNA:   3'- ccACGgCCCCUGu--GugCUUCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 131514 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 76835 0.66 0.855725
Target:  5'- ---uCCGGGGGCGCGCcugcgcGGCGUCGg -3'
miRNA:   3'- ccacGGCCCCUGUGUGcuu---CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 103164 0.66 0.862422
Target:  5'- uGGaGCgCGGGGGCcgccgucaGCGCGGccccgggcuccucGGugGCCGc -3'
miRNA:   3'- -CCaCG-GCCCCUG--------UGUGCU-------------UCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 94498 0.66 0.840297
Target:  5'- --gGCCGGGGccaGCGCGCGGuucuGGugGaCGg -3'
miRNA:   3'- ccaCGGCCCC---UGUGUGCU----UCugCgGC- -5'
21547 3' -58.3 NC_004812.1 + 123820 0.66 0.863156
Target:  5'- gGGUGCCGcGGGCGgGgCccGGGCGCCc -3'
miRNA:   3'- -CCACGGCcCCUGUgU-GcuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 147991 0.66 0.848103
Target:  5'- uGGcGCCGGGcGGCGgGgcCGAGGGCGaCGg -3'
miRNA:   3'- -CCaCGGCCC-CUGUgU--GCUUCUGCgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.