miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 156313 0.66 0.848103
Target:  5'- aGGgagGgCGGGGG-ACGgGAGGGgGCCGa -3'
miRNA:   3'- -CCa--CgGCCCCUgUGUgCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 49012 0.66 0.848103
Target:  5'- cGGcgGCCGGGcccacGCGgACGAGGucaaccGCGCCGc -3'
miRNA:   3'- -CCa-CGGCCCc----UGUgUGCUUC------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 73442 0.66 0.848103
Target:  5'- ---uCCGGGGcCGCGCGccacGGCGCCa -3'
miRNA:   3'- ccacGGCCCCuGUGUGCuu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 129427 0.66 0.832314
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 101932 0.66 0.840297
Target:  5'- cGGgGCCccGGACGCGCGGcgcGGGCGgCGg -3'
miRNA:   3'- -CCaCGGccCCUGUGUGCU---UCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 111968 0.66 0.848103
Target:  5'- --cGCCGGGGuCGgA-GAAGGgGCCGc -3'
miRNA:   3'- ccaCGGCCCCuGUgUgCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 94498 0.66 0.840297
Target:  5'- --gGCCGGGGccaGCGCGCGGuucuGGugGaCGg -3'
miRNA:   3'- ccaCGGCCCC---UGUGUGCU----UCugCgGC- -5'
21547 3' -58.3 NC_004812.1 + 80834 0.66 0.832314
Target:  5'- --aGUCGGGGGCAC-CGugguGGUGCCGa -3'
miRNA:   3'- ccaCGGCCCCUGUGuGCuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 114689 0.66 0.870393
Target:  5'- gGGgcgGCCGcGGGACcggaauGCcguCGAAGAgGCCc -3'
miRNA:   3'- -CCa--CGGC-CCCUG------UGu--GCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 147991 0.66 0.848103
Target:  5'- uGGcGCCGGGcGGCGgGgcCGAGGGCGaCGg -3'
miRNA:   3'- -CCaCGGCCC-CUGUgU--GCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 131514 0.66 0.840297
Target:  5'- --cGCgCGucGGCGCGCGgcGGCGCCGc -3'
miRNA:   3'- ccaCG-GCccCUGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 62593 0.66 0.832314
Target:  5'- --cGCCGGGcACGCccACGGccgguuucuGGACGCCa -3'
miRNA:   3'- ccaCGGCCCcUGUG--UGCU---------UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 84044 0.66 0.848103
Target:  5'- uGGUGUCGGcGAUACcauggccggaACGGAGGgGCCc -3'
miRNA:   3'- -CCACGGCCcCUGUG----------UGCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 114093 0.66 0.848103
Target:  5'- uGUGCCGGGG-CGgACGGauGGGCGg-- -3'
miRNA:   3'- cCACGGCCCCuGUgUGCU--UCUGCggc -5'
21547 3' -58.3 NC_004812.1 + 122779 0.66 0.848103
Target:  5'- --cGCCGaGGGugAC-CGAGGACGgggcgggcucccCCGg -3'
miRNA:   3'- ccaCGGC-CCCugUGuGCUUCUGC------------GGC- -5'
21547 3' -58.3 NC_004812.1 + 58850 0.66 0.832314
Target:  5'- cGGcGCCGGcaaaGAcCACGCGGuucuuGACGCCa -3'
miRNA:   3'- -CCaCGGCCc---CU-GUGUGCUu----CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 156139 0.66 0.832314
Target:  5'- cGG-GCCGcGcGGACGCGgGGcgcgGGACGCgCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGUGUgCU----UCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 65379 0.66 0.848103
Target:  5'- cGGUGgCGcGGaucGACGCgcuccGCGAgcuGGACGCCGc -3'
miRNA:   3'- -CCACgGC-CC---CUGUG-----UGCU---UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 97986 0.66 0.840297
Target:  5'- cGGUggGCC-GGGAgGCACGggGGC-UCGg -3'
miRNA:   3'- -CCA--CGGcCCCUgUGUGCuuCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 144350 0.66 0.832314
Target:  5'- aGGUGCU--GGACACGgugGucGACGCCGa -3'
miRNA:   3'- -CCACGGccCCUGUGUg--CuuCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.