miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 48 0.67 0.824161
Target:  5'- cGG-GCCGcGGGCGCgGCGGcgcGGCGCCa -3'
miRNA:   3'- -CCaCGGCcCCUGUG-UGCUu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 98 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 820 0.69 0.676758
Target:  5'- --gGCCGGGGGucCugGgggucCGggGugGCCGg -3'
miRNA:   3'- ccaCGGCCCCU--GugU-----GCuuCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 885 0.7 0.637214
Target:  5'- gGGUcGCCGGGGGuC-CugGggGuccgggguCGCCGg -3'
miRNA:   3'- -CCA-CGGCCCCU-GuGugCuuCu-------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 937 0.7 0.637214
Target:  5'- gGGUcGCCGGGGGuC-CugGggGuccgggguCGCCGg -3'
miRNA:   3'- -CCA-CGGCCCCU-GuGugCuuCu-------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 989 0.66 0.863156
Target:  5'- gGGUcGCCGGGGuC-CugGggGuccgggguCGCCc -3'
miRNA:   3'- -CCA-CGGCCCCuGuGugCuuCu-------GCGGc -5'
21547 3' -58.3 NC_004812.1 + 1013 0.7 0.6273
Target:  5'- --gGCCGGGGccGCGCccccGCGAGGGC-CCGg -3'
miRNA:   3'- ccaCGGCCCC--UGUG----UGCUUCUGcGGC- -5'
21547 3' -58.3 NC_004812.1 + 1213 0.71 0.577919
Target:  5'- --gGCCGGGGGCGgcgcCGCGggGGCuCCu -3'
miRNA:   3'- ccaCGGCCCCUGU----GUGCuuCUGcGGc -5'
21547 3' -58.3 NC_004812.1 + 1437 0.77 0.291138
Target:  5'- aGGgGCCGGGGccgcgagggccggGCACgGCGgcGACGCCGg -3'
miRNA:   3'- -CCaCGGCCCC-------------UGUG-UGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 1864 0.68 0.744319
Target:  5'- --cGCCGGGGGCcuccAUugGcccGGGCGCCc -3'
miRNA:   3'- ccaCGGCCCCUG----UGugCu--UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 1999 0.69 0.706082
Target:  5'- gGGUcccGCCGGcGGuCGCuCGggG-CGCCGa -3'
miRNA:   3'- -CCA---CGGCC-CCuGUGuGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 2047 0.69 0.696355
Target:  5'- cGGcgGCgGGGGGCGCGggggaGggGGCGCg- -3'
miRNA:   3'- -CCa-CGgCCCCUGUGUg----CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 2457 0.69 0.696355
Target:  5'- aGGcGCCGGccgaGGACGCccuCGAAGACGaCGa -3'
miRNA:   3'- -CCaCGGCC----CCUGUGu--GCUUCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 2601 0.68 0.772059
Target:  5'- cGUGCgCGcGcGGuaGCGCACGuuGGCGCCGc -3'
miRNA:   3'- cCACG-GC-C-CC--UGUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 2672 0.72 0.547707
Target:  5'- --cGCaGGcGGccucgacGCGCGCGAAGACGCCGg -3'
miRNA:   3'- ccaCGgCC-CC-------UGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 2849 0.67 0.824161
Target:  5'- --cGCaCGcGGcgcGACGC-CGAGGACGCCGu -3'
miRNA:   3'- ccaCG-GC-CC---CUGUGuGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 3250 0.69 0.719599
Target:  5'- --cGCCaGGGGCGCccGCGcccccgccgcccgagGAGACGCCGc -3'
miRNA:   3'- ccaCGGcCCCUGUG--UGC---------------UUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 3569 0.71 0.558377
Target:  5'- --cGCCGGcGGGCAgGCGgcGGCGgCGg -3'
miRNA:   3'- ccaCGGCC-CCUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 3632 0.73 0.446485
Target:  5'- --cGCCGGcGGGCGCGCGgcGcCGCCc -3'
miRNA:   3'- ccaCGGCC-CCUGUGUGCuuCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 3718 0.66 0.848103
Target:  5'- cGGcGCCGGcGGAgCGCACcu-GGCGCgGg -3'
miRNA:   3'- -CCaCGGCC-CCU-GUGUGcuuCUGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.