miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 31828 0.75 0.371287
Target:  5'- uGGUGCCGcGGGACcaGCGAGaccgaGCGCCGg -3'
miRNA:   3'- -CCACGGC-CCCUGugUGCUUc----UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 67979 0.76 0.333408
Target:  5'- -aUGCCGGcGGCGCACuGGGGCGCCGc -3'
miRNA:   3'- ccACGGCCcCUGUGUGcUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 121508 0.76 0.333408
Target:  5'- uGGgGCCGGGcGC-CGCGggGGCGCCc -3'
miRNA:   3'- -CCaCGGCCCcUGuGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 31663 0.76 0.340752
Target:  5'- aGG-GCCGGGGACAgcCGCuGggGGCGCa- -3'
miRNA:   3'- -CCaCGGCCCCUGU--GUG-CuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 122262 0.75 0.348213
Target:  5'- cGGgggGCCacGGGGACcacgggggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCa--CGG--CCCCUG--------UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 22906 0.75 0.355789
Target:  5'- aGGUGCgCGGGGGCGuggccgcgccccCGCGccuGGACGCCc -3'
miRNA:   3'- -CCACG-GCCCCUGU------------GUGCu--UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 149002 0.75 0.355789
Target:  5'- gGGUGUgCGGcGGGCcggGCGCGgcGGCGCCGg -3'
miRNA:   3'- -CCACG-GCC-CCUG---UGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 114682 0.75 0.355789
Target:  5'- cGGUGCCGGGcGCGCcCGggGcCGCgGg -3'
miRNA:   3'- -CCACGGCCCcUGUGuGCuuCuGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 121020 0.75 0.355789
Target:  5'- cGG-GCCGGGGGCGCuccccucGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCUGUGugcuu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 35646 0.76 0.329057
Target:  5'- cGUGCCGcGGGcGCGCGCGggGgucgggggcucugugGCGCCGc -3'
miRNA:   3'- cCACGGC-CCC-UGUGUGCuuC---------------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 108763 0.76 0.32618
Target:  5'- --gGCUGGGGG-GCGCGggGGCGCCu -3'
miRNA:   3'- ccaCGGCCCCUgUGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 115712 0.77 0.305199
Target:  5'- aGG-GCCauGGGGACACGgcAAGGCGCCGg -3'
miRNA:   3'- -CCaCGG--CCCCUGUGUgcUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 121731 0.82 0.149755
Target:  5'- aGGUGcCCGGGccGGCGCGCGGcgggGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCC--CUGUGUGCU----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 64090 0.79 0.220957
Target:  5'- -aUGCCGGGGGCGaagagGCgGGAGACGCCGc -3'
miRNA:   3'- ccACGGCCCCUGUg----UG-CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8245 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 98433 0.78 0.254359
Target:  5'- cGGcgGCCGcGGGGCggcagGCGCGggGGCGCCc -3'
miRNA:   3'- -CCa-CGGC-CCCUG-----UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 83732 0.78 0.258515
Target:  5'- -cUGCCGGGGACGCGgGcccggcugccgccaGGGACGCCa -3'
miRNA:   3'- ccACGGCCCCUGUGUgC--------------UUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 7914 0.78 0.266381
Target:  5'- aGGUGUCGGGGGC-UGCGgcGcGCGCCGg -3'
miRNA:   3'- -CCACGGCCCCUGuGUGCuuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 83806 0.77 0.285269
Target:  5'- gGGUGaCCGGGGcgggaguuGCccgACGCGAGGGCGCCc -3'
miRNA:   3'- -CCAC-GGCCCC--------UG---UGUGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 126945 0.77 0.291138
Target:  5'- aGGgGCCGGGGccgcgagggccggGCACgGCGgcGACGCCGg -3'
miRNA:   3'- -CCaCGGCCCC-------------UGUG-UGCuuCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.