miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 12604 1.09 0.002059
Target:  5'- gGGUGCCGGGGACACACGAAGACGCCGc -3'
miRNA:   3'- -CCACGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5040 0.98 0.012798
Target:  5'- cGG-GCCGGGGGCGCGCGAGGGCGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130549 0.98 0.012798
Target:  5'- cGG-GCCGGGGGCGCGCGAGGGCGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 10580 0.88 0.058096
Target:  5'- cGGUGCCGGGGGCAuuuaugcgcCGCGGAG-CGCCGa -3'
miRNA:   3'- -CCACGGCCCCUGU---------GUGCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 133250 0.85 0.088003
Target:  5'- cGGcgGCCGGGGcgguGCACAgGAGGGCGCCGa -3'
miRNA:   3'- -CCa-CGGCCCC----UGUGUgCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 121731 0.82 0.149755
Target:  5'- aGGUGcCCGGGccGGCGCGCGGcgggGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCC--CUGUGUGCU----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 152632 0.81 0.165311
Target:  5'- aGGUGcCCGGGccGGCGCGCGGcggggGGGCGCCGg -3'
miRNA:   3'- -CCAC-GGCCC--CUGUGUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 64090 0.79 0.220957
Target:  5'- -aUGCCGGGGGCGaagagGCgGGAGACGCCGc -3'
miRNA:   3'- ccACGGCCCCUGUg----UG-CUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 39146 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8245 0.79 0.231655
Target:  5'- cGG-GCCGGGGGucCGCcccCGggGGCGCCGg -3'
miRNA:   3'- -CCaCGGCCCCU--GUGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 98433 0.78 0.254359
Target:  5'- cGGcgGCCGcGGGGCggcagGCGCGggGGCGCCc -3'
miRNA:   3'- -CCa-CGGC-CCCUG-----UGUGCuuCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 83732 0.78 0.258515
Target:  5'- -cUGCCGGGGACGCGgGcccggcugccgccaGGGACGCCa -3'
miRNA:   3'- ccACGGCCCCUGUGUgC--------------UUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 82784 0.78 0.264548
Target:  5'- gGGUGCCGcuGGGACgagcuggggugggaGCGCGggG-CGCCGg -3'
miRNA:   3'- -CCACGGC--CCCUG--------------UGUGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 138411 0.78 0.266381
Target:  5'- aGUaCUGGGGGguCGCGGAGACGCCGu -3'
miRNA:   3'- cCAcGGCCCCUguGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 38815 0.78 0.266381
Target:  5'- aGGUGUCGGGGGC-UGCGgcGcGCGCCGg -3'
miRNA:   3'- -CCACGGCCCCUGuGUGCuuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 7914 0.78 0.266381
Target:  5'- aGGUGUCGGGGGC-UGCGgcGcGCGCCGg -3'
miRNA:   3'- -CCACGGCCCCUGuGUGCuuC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 49647 0.77 0.278858
Target:  5'- aGGcGCCccuGGGGuACGCGCGGAGAgCGCCGu -3'
miRNA:   3'- -CCaCGG---CCCC-UGUGUGCUUCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 81815 0.77 0.278858
Target:  5'- cGGgcggGCCcgcGGGGGCGCGgGAAGuCGCCGg -3'
miRNA:   3'- -CCa---CGG---CCCCUGUGUgCUUCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 83806 0.77 0.285269
Target:  5'- gGGUGaCCGGGGcgggaguuGCccgACGCGAGGGCGCCc -3'
miRNA:   3'- -CCAC-GGCCCC--------UG---UGUGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 126945 0.77 0.291138
Target:  5'- aGGgGCCGGGGccgcgagggccggGCACgGCGgcGACGCCGg -3'
miRNA:   3'- -CCaCGGCCCC-------------UGUG-UGCuuCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.