miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 48909 0.66 0.863156
Target:  5'- gGGUGCuCGcGGGcCACGCcguGGuCGCCa -3'
miRNA:   3'- -CCACG-GC-CCCuGUGUGcu-UCuGCGGc -5'
21547 3' -58.3 NC_004812.1 + 49501 0.66 0.863156
Target:  5'- uGGcGCUGGGGugGgACGGccucgucacACGCCGg -3'
miRNA:   3'- -CCaCGGCCCCugUgUGCUuc-------UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 51540 0.66 0.862422
Target:  5'- cGGcGCCGGGGGgccagugugcgccCGCGgcCGGAGcgGCGCCu -3'
miRNA:   3'- -CCaCGGCCCCU-------------GUGU--GCUUC--UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 110178 0.66 0.862422
Target:  5'- gGGUGUcgacgaggaggCGGcguaccuGGACGCGCugcacGAGACGCCGa -3'
miRNA:   3'- -CCACG-----------GCC-------CCUGUGUGc----UUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 103164 0.66 0.862422
Target:  5'- uGGaGCgCGGGGGCcgccgucaGCGCGGccccgggcuccucGGugGCCGc -3'
miRNA:   3'- -CCaCG-GCCCCUG--------UGUGCU-------------UCugCGGC- -5'
21547 3' -58.3 NC_004812.1 + 18328 0.66 0.860947
Target:  5'- cGGUGCCGGaccacgGGAUgucugucgacaucgGCcacCGgcGGCGCCGg -3'
miRNA:   3'- -CCACGGCC------CCUG--------------UGu--GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 8305 0.66 0.855725
Target:  5'- --cGCCGGGaGcuccgcgcguACGCcgACGAGGAgCGCCGa -3'
miRNA:   3'- ccaCGGCCC-C----------UGUG--UGCUUCU-GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 35982 0.66 0.855725
Target:  5'- cGGgggGCCGGGGuCcgGC-CGggGAgGCgGg -3'
miRNA:   3'- -CCa--CGGCCCCuG--UGuGCuuCUgCGgC- -5'
21547 3' -58.3 NC_004812.1 + 121682 0.66 0.855725
Target:  5'- --cGgCGGGcGGCGCGaGAGGACGCgGa -3'
miRNA:   3'- ccaCgGCCC-CUGUGUgCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 98674 0.66 0.855725
Target:  5'- gGGUcgaGCCGGGGcGgGCGCGGucGAacCGCCGn -3'
miRNA:   3'- -CCA---CGGCCCC-UgUGUGCUu-CU--GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 104401 0.66 0.855725
Target:  5'- uGGUGUCGGccauGGAgCGCACGGAGcACaagGCCc -3'
miRNA:   3'- -CCACGGCC----CCU-GUGUGCUUC-UG---CGGc -5'
21547 3' -58.3 NC_004812.1 + 124851 0.66 0.855725
Target:  5'- cGGUGgCGuGGGGCGgGCGcc-GCGCCc -3'
miRNA:   3'- -CCACgGC-CCCUGUgUGCuucUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 152583 0.66 0.855725
Target:  5'- --cGgCGGGcGGCGCGaGAGGACGCgGa -3'
miRNA:   3'- ccaCgGCCC-CUGUGUgCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 30184 0.66 0.855725
Target:  5'- cGG-GCUcGGcGCGCGCGAGGGCGUgGg -3'
miRNA:   3'- -CCaCGGcCCcUGUGUGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 99106 0.66 0.855725
Target:  5'- gGGUGuuGGGGG-AgAgGGAGaACGCUGg -3'
miRNA:   3'- -CCACggCCCCUgUgUgCUUC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 63046 0.66 0.855725
Target:  5'- uGGUaccGCCuGGGGCGCggGCGGgacGGcACGCCGc -3'
miRNA:   3'- -CCA---CGGcCCCUGUG--UGCU---UC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 70062 0.66 0.855725
Target:  5'- uGUGCaGGGcGCACGCGAAccacACGCUGg -3'
miRNA:   3'- cCACGgCCCcUGUGUGCUUc---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 81104 0.66 0.855725
Target:  5'- cGUGCaccGGGCGCugGggGGCguGCCGc -3'
miRNA:   3'- cCACGgccCCUGUGugCuuCUG--CGGC- -5'
21547 3' -58.3 NC_004812.1 + 5081 0.66 0.855725
Target:  5'- cGGgggGCCGGGGuCcgGC-CGggGAgGCgGg -3'
miRNA:   3'- -CCa--CGGCCCCuG--UGuGCuuCUgCGgC- -5'
21547 3' -58.3 NC_004812.1 + 106215 0.66 0.855725
Target:  5'- aGGUGgCggaaGGGGGCG-ACGgcGGCGUCGa -3'
miRNA:   3'- -CCACgG----CCCCUGUgUGCuuCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.