miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 3919 0.66 0.832315
Target:  5'- cGGcGgCGGGGcCGCGCGgcGGCGgCa -3'
miRNA:   3'- -CCaCgGCCCCuGUGUGCuuCUGCgGc -5'
21547 3' -58.3 NC_004812.1 + 4183 0.67 0.824161
Target:  5'- --cGCCacguGGACGC-CGAGGGCGCCc -3'
miRNA:   3'- ccaCGGcc--CCUGUGuGCUUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 4200 0.72 0.548675
Target:  5'- cGGgaacGgCGGGGAC-CGCGgcGGCGUCGg -3'
miRNA:   3'- -CCa---CgGCCCCUGuGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 4349 0.72 0.510448
Target:  5'- uGGUGCuCGuGGGGCGCGCGugcaacauGGCGCgCGc -3'
miRNA:   3'- -CCACG-GC-CCCUGUGUGCuu------CUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 4631 0.68 0.725351
Target:  5'- aGGgGCgGGGGGgcgggacgccCGCGCGggGAggggcuCGCCGg -3'
miRNA:   3'- -CCaCGgCCCCU----------GUGUGCuuCU------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 4748 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 4852 0.68 0.77115
Target:  5'- cGGgGCCGGGGAggggccgcggccCGCGCGAGaaacaacGAgGCCu -3'
miRNA:   3'- -CCaCGGCCCCU------------GUGUGCUU-------CUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 4936 0.68 0.762919
Target:  5'- --cGCgGaGGcGGCGCugGAGGGCgGCCGg -3'
miRNA:   3'- ccaCGgC-CC-CUGUGugCUUCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 5022 0.67 0.789981
Target:  5'- cGGcagGUgGGGcGGCAgGCGggGcaGCGCCGc -3'
miRNA:   3'- -CCa--CGgCCC-CUGUgUGCuuC--UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5040 0.98 0.012798
Target:  5'- cGG-GCCGGGGGCGCGCGAGGGCGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUGUGUGCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5081 0.66 0.855725
Target:  5'- cGGgggGCCGGGGuCcgGC-CGggGAgGCgGg -3'
miRNA:   3'- -CCa--CGGCCCCuG--UGuGCuuCUgCGgC- -5'
21547 3' -58.3 NC_004812.1 + 5120 0.68 0.744319
Target:  5'- gGGUcCgGGGGGCggGCGCGGAGGCgggaggGCCGc -3'
miRNA:   3'- -CCAcGgCCCCUG--UGUGCUUCUG------CGGC- -5'
21547 3' -58.3 NC_004812.1 + 5346 0.71 0.568127
Target:  5'- cGGgGUCGGcGGGgGCGCGgcGGCGUCGa -3'
miRNA:   3'- -CCaCGGCC-CCUgUGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5397 0.72 0.501062
Target:  5'- cGGgGCCGGGGGCGucgccggcccCGCGGAcGACGgCGg -3'
miRNA:   3'- -CCaCGGCCCCUGU----------GUGCUU-CUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 5473 0.69 0.71575
Target:  5'- aGG-GCCacggGGGGGCGagggucaccCACGGgaggaGGACGCCGg -3'
miRNA:   3'- -CCaCGG----CCCCUGU---------GUGCU-----UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5486 0.71 0.587748
Target:  5'- --gGCgCGGGGACACGgCGgcGGCGgCGg -3'
miRNA:   3'- ccaCG-GCCCCUGUGU-GCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 5540 0.67 0.789981
Target:  5'- cGG-GCCGGGGGCcccccagagGgGCGGAGgaggacucGCGCCc -3'
miRNA:   3'- -CCaCGGCCCCUG---------UgUGCUUC--------UGCGGc -5'
21547 3' -58.3 NC_004812.1 + 5627 0.7 0.647124
Target:  5'- aGGcgGCuCGGGGGCcggGCcCGggGuCGCCGg -3'
miRNA:   3'- -CCa-CG-GCCCCUG---UGuGCuuCuGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5666 0.67 0.781083
Target:  5'- --cGCCGGGGGgcgucggaguccUGCGCGA--ACGCCGc -3'
miRNA:   3'- ccaCGGCCCCU------------GUGUGCUucUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 5712 0.68 0.734877
Target:  5'- gGGgggGCgGGGGucugcCGCGgGAggaGGGCGCCGg -3'
miRNA:   3'- -CCa--CGgCCCCu----GUGUgCU---UCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.