miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 36144 0.66 0.899294
Target:  5'- cCCAcGggUUggcCGUGGCgGCGCaggGGUGc -3'
miRNA:   3'- -GGUaCuuGAa--GCACCGgCGCGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 37159 0.67 0.892801
Target:  5'- gCCGUGGug--CGcucGGCCGCGUUGuGCGc -3'
miRNA:   3'- -GGUACUugaaGCa--CCGGCGCGAC-CGC- -5'
21551 3' -56 NC_004812.1 + 39383 0.66 0.928294
Target:  5'- gCCAgcuGCUgaaUGGcCCGCaGCUGGCGg -3'
miRNA:   3'- -GGUacuUGAagcACC-GGCG-CGACCGC- -5'
21551 3' -56 NC_004812.1 + 43310 0.67 0.892801
Target:  5'- gCCAcGAACUgCGUGccGCCGaaggGCUGGUGc -3'
miRNA:   3'- -GGUaCUUGAaGCAC--CGGCg---CGACCGC- -5'
21551 3' -56 NC_004812.1 + 44775 0.71 0.67378
Target:  5'- cCCAUGGGa--CGauuGCCGUGCUGGCGa -3'
miRNA:   3'- -GGUACUUgaaGCac-CGGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 45621 0.7 0.713756
Target:  5'- cUCAUGGGCg-CGgggacGGCCGCGCUGcccGCGg -3'
miRNA:   3'- -GGUACUUGaaGCa----CCGGCGCGAC---CGC- -5'
21551 3' -56 NC_004812.1 + 46297 0.71 0.69387
Target:  5'- gCCGgaGGCcgCGgcgGGCCGCGCgGGCGa -3'
miRNA:   3'- -GGUacUUGaaGCa--CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 49439 0.7 0.732397
Target:  5'- gUCGUGGACaugUCGUccggugcccgccaGGCgGCGCUGGUu -3'
miRNA:   3'- -GGUACUUGa--AGCA-------------CCGgCGCGACCGc -5'
21551 3' -56 NC_004812.1 + 50560 0.77 0.370742
Target:  5'- aCCGcugGAGCcUCGUGGCCgaGCGCcGGCGg -3'
miRNA:   3'- -GGUa--CUUGaAGCACCGG--CGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 51890 0.69 0.789848
Target:  5'- gCCGUGGGCg-CGUGGCgGCcacgcacgcccGCaUGGCGg -3'
miRNA:   3'- -GGUACUUGaaGCACCGgCG-----------CG-ACCGC- -5'
21551 3' -56 NC_004812.1 + 52697 0.74 0.494222
Target:  5'- aCC-UGGGCUUCGgggacgGGcCCGCGCUGuGCa -3'
miRNA:   3'- -GGuACUUGAAGCa-----CC-GGCGCGAC-CGc -5'
21551 3' -56 NC_004812.1 + 53427 0.7 0.73337
Target:  5'- aCCGagGAGCc-CGgGGCCGCGCUgacGGCGg -3'
miRNA:   3'- -GGUa-CUUGaaGCaCCGGCGCGA---CCGC- -5'
21551 3' -56 NC_004812.1 + 54763 0.66 0.928294
Target:  5'- gCgGUGGACacggcggcgcUCGUGGCCGaccuaGCgggGGCGc -3'
miRNA:   3'- -GgUACUUGa---------AGCACCGGCg----CGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 55307 0.66 0.899294
Target:  5'- -gGUGGGCU-CGgcgcgGGCCGaCGCccgGGCGu -3'
miRNA:   3'- ggUACUUGAaGCa----CCGGC-GCGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 55513 0.69 0.789848
Target:  5'- aCCGcGAguGCcgCGUGGCCGUGCgccacgcGGCGc -3'
miRNA:   3'- -GGUaCU--UGaaGCACCGGCGCGa------CCGC- -5'
21551 3' -56 NC_004812.1 + 57050 0.69 0.771487
Target:  5'- gCCAgGAGCUUCugccgGGCCGCGgUcGGCu -3'
miRNA:   3'- -GGUaCUUGAAGca---CCGGCGCgA-CCGc -5'
21551 3' -56 NC_004812.1 + 57784 0.75 0.484751
Target:  5'- gCGUGG--UUCGaGGCgGCGCUGGCGa -3'
miRNA:   3'- gGUACUugAAGCaCCGgCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 58628 0.66 0.928294
Target:  5'- ---gGAGCUUCGcggggaacUGGuuGCGCUGcaGCGc -3'
miRNA:   3'- gguaCUUGAAGC--------ACCggCGCGAC--CGC- -5'
21551 3' -56 NC_004812.1 + 68157 0.69 0.798823
Target:  5'- cCCAUGGACcucaggcggUCGUGGCCccgGCGgcaCUGGgGg -3'
miRNA:   3'- -GGUACUUGa--------AGCACCGG---CGC---GACCgC- -5'
21551 3' -56 NC_004812.1 + 69275 0.77 0.370742
Target:  5'- uCCAUGAGCcgcaUCGUcgGGCCGCGCUccaGGCc -3'
miRNA:   3'- -GGUACUUGa---AGCA--CCGGCGCGA---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.