miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 5997 0.66 0.899294
Target:  5'- cCCcgGAACgcgCGUcGG-CGCGC-GGCGg -3'
miRNA:   3'- -GGuaCUUGaa-GCA-CCgGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 8640 0.68 0.841312
Target:  5'- gCCAUGAGCa-CGgagcGCCGCGggGGCGu -3'
miRNA:   3'- -GGUACUUGaaGCac--CGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 9041 0.68 0.841312
Target:  5'- gCCAUGccguaCGcGGCCGCGCcGGCa -3'
miRNA:   3'- -GGUACuugaaGCaCCGGCGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 9377 1.1 0.002884
Target:  5'- gCCAUGAACUUCGUGGCCGCGCUGGCGc -3'
miRNA:   3'- -GGUACUUGAAGCACCGGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 10321 0.7 0.743051
Target:  5'- gCUggGAucGCUUCGUGGCCaGCGC-GGUu -3'
miRNA:   3'- -GGuaCU--UGAAGCACCGG-CGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 10974 0.76 0.387066
Target:  5'- -gGUGAGag--GUGGCCGUGCUGGCGc -3'
miRNA:   3'- ggUACUUgaagCACCGGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 12810 0.66 0.911593
Target:  5'- ---cGAACUgcgCGUggacGGCCGCGgUGGUc -3'
miRNA:   3'- gguaCUUGAa--GCA----CCGGCGCgACCGc -5'
21551 3' -56 NC_004812.1 + 14345 0.68 0.832334
Target:  5'- uCCggGAGCcgcaCGUgcuugccGGCCGCGCgGGCGc -3'
miRNA:   3'- -GGuaCUUGaa--GCA-------CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 15314 0.67 0.892801
Target:  5'- cCCGUGAug--CGcaGGCCGCGCgagGGgGa -3'
miRNA:   3'- -GGUACUugaaGCa-CCGGCGCGa--CCgC- -5'
21551 3' -56 NC_004812.1 + 16220 0.67 0.892801
Target:  5'- -gGUGGugUcCGUGGCgaGCGC-GGCGu -3'
miRNA:   3'- ggUACUugAaGCACCGg-CGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 16867 0.69 0.798823
Target:  5'- cCCcgGGACcggCGUGGcCCGuCGCgGGUGg -3'
miRNA:   3'- -GGuaCUUGaa-GCACC-GGC-GCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 19413 0.69 0.771487
Target:  5'- gUCAcGGcCUgcgCGUGGCCGCGC-GGCc -3'
miRNA:   3'- -GGUaCUuGAa--GCACCGGCGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 22907 0.66 0.928294
Target:  5'- -gGUGcGCgggggCGUGGCCGCGCccccGCGc -3'
miRNA:   3'- ggUACuUGaa---GCACCGGCGCGac--CGC- -5'
21551 3' -56 NC_004812.1 + 24854 0.67 0.892801
Target:  5'- gCCGcGGGCggCGcGGCUGCGggGGCGu -3'
miRNA:   3'- -GGUaCUUGaaGCaCCGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 26257 0.67 0.886084
Target:  5'- aCcgGGAC-UCGggggacgcGGCCGCGCgGGUGc -3'
miRNA:   3'- gGuaCUUGaAGCa-------CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 26628 0.68 0.857052
Target:  5'- aCAgcAGCgccUCGUGGgUGCGCUGGUa -3'
miRNA:   3'- gGUacUUGa--AGCACCgGCGCGACCGc -5'
21551 3' -56 NC_004812.1 + 27123 0.67 0.864624
Target:  5'- gCCGaGGGCUaCGgcggcgaccUGGCCGCcgugcccggGCUGGCGg -3'
miRNA:   3'- -GGUaCUUGAaGC---------ACCGGCG---------CGACCGC- -5'
21551 3' -56 NC_004812.1 + 28565 0.68 0.833159
Target:  5'- gCCGcGAugUUC--GGCCGgcaGCUGGCGg -3'
miRNA:   3'- -GGUaCUugAAGcaCCGGCg--CGACCGC- -5'
21551 3' -56 NC_004812.1 + 29364 0.7 0.743051
Target:  5'- ---cGGGC-UCG-GGCCGCGgaGGCGc -3'
miRNA:   3'- gguaCUUGaAGCaCCGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 30519 0.66 0.911593
Target:  5'- gCCcgGGGC--CGggGGCCGCGCcgcgggacgGGCGg -3'
miRNA:   3'- -GGuaCUUGaaGCa-CCGGCGCGa--------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.