miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 9377 1.1 0.002884
Target:  5'- gCCAUGAACUUCGUGGCCGCGCUGGCGc -3'
miRNA:   3'- -GGUACUUGAAGCACCGGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 82880 0.77 0.354895
Target:  5'- aCAUGAACgacgUCaUGGUgGCGCUGGUGg -3'
miRNA:   3'- gGUACUUGa---AGcACCGgCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 69275 0.77 0.370742
Target:  5'- uCCAUGAGCcgcaUCGUcgGGCCGCGCUccaGGCc -3'
miRNA:   3'- -GGUACUUGa---AGCA--CCGGCGCGA---CCGc -5'
21551 3' -56 NC_004812.1 + 50560 0.77 0.370742
Target:  5'- aCCGcugGAGCcUCGUGGCCgaGCGCcGGCGg -3'
miRNA:   3'- -GGUa--CUUGaAGCACCGG--CGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 104166 0.76 0.387066
Target:  5'- gCCGUcGGGCUgcuggUCcUGGCCGgGCUGGCGg -3'
miRNA:   3'- -GGUA-CUUGA-----AGcACCGGCgCGACCGC- -5'
21551 3' -56 NC_004812.1 + 10974 0.76 0.387066
Target:  5'- -gGUGAGag--GUGGCCGUGCUGGCGc -3'
miRNA:   3'- ggUACUUgaagCACCGGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 85043 0.76 0.395404
Target:  5'- gUCGcUGAACUuccUCGUGGCCGCGUgcgccccGGCGu -3'
miRNA:   3'- -GGU-ACUUGA---AGCACCGGCGCGa------CCGC- -5'
21551 3' -56 NC_004812.1 + 110564 0.76 0.412422
Target:  5'- aCGUGccGGCgUUCGUGGCCGCGCacGCGg -3'
miRNA:   3'- gGUAC--UUG-AAGCACCGGCGCGacCGC- -5'
21551 3' -56 NC_004812.1 + 57784 0.75 0.484751
Target:  5'- gCGUGG--UUCGaGGCgGCGCUGGCGa -3'
miRNA:   3'- gGUACUugAAGCaCCGgCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 146510 0.75 0.484751
Target:  5'- gCCGUGGGCc---UGGCCGgGCUGGUGa -3'
miRNA:   3'- -GGUACUUGaagcACCGGCgCGACCGC- -5'
21551 3' -56 NC_004812.1 + 52697 0.74 0.494222
Target:  5'- aCC-UGGGCUUCGgggacgGGcCCGCGCUGuGCa -3'
miRNA:   3'- -GGuACUUGAAGCa-----CC-GGCGCGAC-CGc -5'
21551 3' -56 NC_004812.1 + 96356 0.74 0.503777
Target:  5'- cCCAgggGGGCUUCGaGcGCCGC-CUGGCGu -3'
miRNA:   3'- -GGUa--CUUGAAGCaC-CGGCGcGACCGC- -5'
21551 3' -56 NC_004812.1 + 103191 0.74 0.513411
Target:  5'- gCCccGGGCUccUCgGUGGCCGCGCUG-CGg -3'
miRNA:   3'- -GGuaCUUGA--AG-CACCGGCGCGACcGC- -5'
21551 3' -56 NC_004812.1 + 107543 0.73 0.542742
Target:  5'- cCCAgagGAACaggUUGUGGCCGCgGCUcaggaaGGCGg -3'
miRNA:   3'- -GGUa--CUUGa--AGCACCGGCG-CGA------CCGC- -5'
21551 3' -56 NC_004812.1 + 73433 0.73 0.552645
Target:  5'- gCCGcGAGCUcCGgGGCCGCGCgccacGGCGc -3'
miRNA:   3'- -GGUaCUUGAaGCaCCGGCGCGa----CCGC- -5'
21551 3' -56 NC_004812.1 + 77092 0.73 0.572605
Target:  5'- uCCGUGAGCUUgGcGGCCGCcaUGGCc -3'
miRNA:   3'- -GGUACUUGAAgCaCCGGCGcgACCGc -5'
21551 3' -56 NC_004812.1 + 98615 0.73 0.58265
Target:  5'- cCCGUGGccgucGCggccgUCGcGGCCGCGCUGcGCc -3'
miRNA:   3'- -GGUACU-----UGa----AGCaCCGGCGCGAC-CGc -5'
21551 3' -56 NC_004812.1 + 97805 0.72 0.633264
Target:  5'- gCCAaGAACcgCGUGGCCGguaUGCaGGCGg -3'
miRNA:   3'- -GGUaCUUGaaGCACCGGC---GCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 143357 0.72 0.633264
Target:  5'- uUCcgGucCUUCGaGGCCGUGCUGcGCGa -3'
miRNA:   3'- -GGuaCuuGAAGCaCCGGCGCGAC-CGC- -5'
21551 3' -56 NC_004812.1 + 75465 0.72 0.643414
Target:  5'- uUCAUGGgccACUUUcUGG-CGCGCUGGCGc -3'
miRNA:   3'- -GGUACU---UGAAGcACCgGCGCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.