miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 145335 0.69 0.780733
Target:  5'- cUCGUGGGCgugcUCGgggcGGCCGUgggGCUGGCc -3'
miRNA:   3'- -GGUACUUGa---AGCa---CCGGCG---CGACCGc -5'
21551 3' -56 NC_004812.1 + 49439 0.7 0.732397
Target:  5'- gUCGUGGACaugUCGUccggugcccgccaGGCgGCGCUGGUu -3'
miRNA:   3'- -GGUACUUGa--AGCA-------------CCGgCGCGACCGc -5'
21551 3' -56 NC_004812.1 + 10321 0.7 0.743051
Target:  5'- gCUggGAucGCUUCGUGGCCaGCGC-GGUu -3'
miRNA:   3'- -GGuaCU--UGAAGCACCGG-CGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 154872 0.7 0.743051
Target:  5'- ---cGGGC-UCG-GGCCGCGgaGGCGc -3'
miRNA:   3'- gguaCUUGaAGCaCCGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 70854 0.7 0.762119
Target:  5'- cCCAcagGAgacGCggggggCGUGGCUGCGCggggggGGCGg -3'
miRNA:   3'- -GGUa--CU---UGaa----GCACCGGCGCGa-----CCGC- -5'
21551 3' -56 NC_004812.1 + 71185 0.7 0.762119
Target:  5'- uCCGUaGAGCgcgacaccgCG-GGCCGCGCcaGGCGg -3'
miRNA:   3'- -GGUA-CUUGaa-------GCaCCGGCGCGa-CCGC- -5'
21551 3' -56 NC_004812.1 + 19413 0.69 0.771487
Target:  5'- gUCAcGGcCUgcgCGUGGCCGCGC-GGCc -3'
miRNA:   3'- -GGUaCUuGAa--GCACCGGCGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 147187 0.69 0.771487
Target:  5'- gUCAUGAGCaggUCGUGcaUGUGCUGGUGg -3'
miRNA:   3'- -GGUACUUGa--AGCACcgGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 57050 0.69 0.771487
Target:  5'- gCCAgGAGCUUCugccgGGCCGCGgUcGGCu -3'
miRNA:   3'- -GGUaCUUGAAGca---CCGGCGCgA-CCGc -5'
21551 3' -56 NC_004812.1 + 123537 0.7 0.713756
Target:  5'- uCCAUGGG-UUCG-GGCCGgGCgucccggGGCGa -3'
miRNA:   3'- -GGUACUUgAAGCaCCGGCgCGa------CCGC- -5'
21551 3' -56 NC_004812.1 + 45621 0.7 0.713756
Target:  5'- cUCAUGGGCg-CGgggacGGCCGCGCUGcccGCGg -3'
miRNA:   3'- -GGUACUUGaaGCa----CCGGCGCGAC---CGC- -5'
21551 3' -56 NC_004812.1 + 46297 0.71 0.69387
Target:  5'- gCCGgaGGCcgCGgcgGGCCGCGCgGGCGa -3'
miRNA:   3'- -GGUacUUGaaGCa--CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 85043 0.76 0.395404
Target:  5'- gUCGcUGAACUuccUCGUGGCCGCGUgcgccccGGCGu -3'
miRNA:   3'- -GGU-ACUUGA---AGCACCGGCGCGa------CCGC- -5'
21551 3' -56 NC_004812.1 + 110564 0.76 0.412422
Target:  5'- aCGUGccGGCgUUCGUGGCCGCGCacGCGg -3'
miRNA:   3'- gGUAC--UUG-AAGCACCGGCGCGacCGC- -5'
21551 3' -56 NC_004812.1 + 103191 0.74 0.513411
Target:  5'- gCCccGGGCUccUCgGUGGCCGCGCUG-CGg -3'
miRNA:   3'- -GGuaCUUGA--AG-CACCGGCGCGACcGC- -5'
21551 3' -56 NC_004812.1 + 73433 0.73 0.552645
Target:  5'- gCCGcGAGCUcCGgGGCCGCGCgccacGGCGc -3'
miRNA:   3'- -GGUaCUUGAaGCaCCGGCGCGa----CCGC- -5'
21551 3' -56 NC_004812.1 + 77092 0.73 0.572605
Target:  5'- uCCGUGAGCUUgGcGGCCGCcaUGGCc -3'
miRNA:   3'- -GGUACUUGAAgCaCCGGCGcgACCGc -5'
21551 3' -56 NC_004812.1 + 98615 0.73 0.58265
Target:  5'- cCCGUGGccgucGCggccgUCGcGGCCGCGCUGcGCc -3'
miRNA:   3'- -GGUACU-----UGa----AGCaCCGGCGCGAC-CGc -5'
21551 3' -56 NC_004812.1 + 77458 0.71 0.653555
Target:  5'- gCCGggGGGC-UCGUGGCgaGCGgaGGCGg -3'
miRNA:   3'- -GGUa-CUUGaAGCACCGg-CGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 115464 0.71 0.69387
Target:  5'- gCCGcUGGGCUcgccgcgcgCGUgcGGCCGCGCcgGGCGg -3'
miRNA:   3'- -GGU-ACUUGAa--------GCA--CCGGCGCGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.