miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 8041 0.66 0.885936
Target:  5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3'
miRNA:   3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 152502 0.66 0.871709
Target:  5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3'
miRNA:   3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 80035 0.66 0.885936
Target:  5'- aCgGCCgAGCACAUGCGCGGgggguCgCUGC-Cg -3'
miRNA:   3'- gGgUGG-UCGUGUACGUGCU-----G-GACGaG- -5'
21551 5' -56.5 NC_004812.1 + 87580 0.66 0.885936
Target:  5'- -aCGCCcGC-CAUGCugGGCCUGg-- -3'
miRNA:   3'- ggGUGGuCGuGUACGugCUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 142305 0.66 0.878933
Target:  5'- cCCCggGCCGGCGCGgcgggGCGCGcCCUaCUg -3'
miRNA:   3'- -GGG--UGGUCGUGUa----CGUGCuGGAcGAg -5'
21551 5' -56.5 NC_004812.1 + 68742 0.66 0.876789
Target:  5'- aCCGCgGGCAgacgcgaacgccguCGUGCGCGcacGCCgagcUGCUCg -3'
miRNA:   3'- gGGUGgUCGU--------------GUACGUGC---UGG----ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 7755 0.66 0.871709
Target:  5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3'
miRNA:   3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 52315 0.66 0.871709
Target:  5'- cCCCGCCGucGCccGCcgGCgACGGCCcgucGCUCu -3'
miRNA:   3'- -GGGUGGU--CG--UGuaCG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 103152 0.66 0.883161
Target:  5'- gCCCGCUgcgucuggAGCGCGggggccgccgucaGCGCGGCCccggGCUCc -3'
miRNA:   3'- -GGGUGG--------UCGUGUa------------CGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 16844 0.66 0.892715
Target:  5'- gCCGCCcuuaGGCGCGcgGUcgcgggggaccGCGACCUGgUCg -3'
miRNA:   3'- gGGUGG----UCGUGUa-CG-----------UGCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 20988 0.66 0.878933
Target:  5'- cUCCAgCAGCACcagGUGCACGaagcGCgUGCg- -3'
miRNA:   3'- -GGGUgGUCGUG---UACGUGC----UGgACGag -5'
21551 5' -56.5 NC_004812.1 + 5795 0.66 0.878933
Target:  5'- gCCCGCCucgggcugcggGGCuGCGggGCGCGGCggGCUCu -3'
miRNA:   3'- -GGGUGG-----------UCG-UGUa-CGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 37492 0.66 0.885936
Target:  5'- uUCGCCGcGuCGCcgGCGCGcGCCUGCg- -3'
miRNA:   3'- gGGUGGU-C-GUGuaCGUGC-UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 37612 0.66 0.878933
Target:  5'- aCCCGgCAGUcCcgGUGCGCGuCCagcUGCUCg -3'
miRNA:   3'- -GGGUgGUCGuG--UACGUGCuGG---ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 18772 0.66 0.872441
Target:  5'- gUCGCCAGCGCcaggaccucccgggGCcagGgGGCCUGCUCc -3'
miRNA:   3'- gGGUGGUCGUGua------------CG---UgCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 145305 0.66 0.878933
Target:  5'- cCCCGCCccgcGGCGCcccGCGCGGCgCgccucgugggcgUGCUCg -3'
miRNA:   3'- -GGGUGG----UCGUGua-CGUGCUG-G------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 23786 0.66 0.871709
Target:  5'- gCCAuCCGaCGCGUGCGCGGCUccaUGCg- -3'
miRNA:   3'- gGGU-GGUcGUGUACGUGCUGG---ACGag -5'
21551 5' -56.5 NC_004812.1 + 33390 0.66 0.892715
Target:  5'- gCCGCgGgucgugacGCACAcgaacGCgACGGCCUGCUCc -3'
miRNA:   3'- gGGUGgU--------CGUGUa----CG-UGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 2976 0.66 0.864271
Target:  5'- cCCCGCCcGCccGCAUGgGCGGCCcGUc- -3'
miRNA:   3'- -GGGUGGuCG--UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 93065 0.66 0.864271
Target:  5'- cCCUGCCGGC-CGgaccCACGACCcuggaGCUCg -3'
miRNA:   3'- -GGGUGGUCGuGUac--GUGCUGGa----CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.