miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 68742 0.66 0.876789
Target:  5'- aCCGCgGGCAgacgcgaacgccguCGUGCGCGcacGCCgagcUGCUCg -3'
miRNA:   3'- gGGUGgUCGU--------------GUACGUGC---UGG----ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 116540 0.66 0.87822
Target:  5'- gCCCGCCGcccggaaaagcGCACGaGCggccgcgGCGGCC-GCUCg -3'
miRNA:   3'- -GGGUGGU-----------CGUGUaCG-------UGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 91166 0.66 0.878933
Target:  5'- aCUCGCgCAGCACGUcgucCACGcucGCCUGCg- -3'
miRNA:   3'- -GGGUG-GUCGUGUAc---GUGC---UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 113952 0.66 0.871709
Target:  5'- gCCCcCCuGUACGUGCACGGCaaauacuuuuaUUGCa- -3'
miRNA:   3'- -GGGuGGuCGUGUACGUGCUG-----------GACGag -5'
21551 5' -56.5 NC_004812.1 + 80979 0.66 0.871709
Target:  5'- aCCGCCgcGGCGCGcUGguCGGuCgUGCUCg -3'
miRNA:   3'- gGGUGG--UCGUGU-ACguGCU-GgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 152587 0.66 0.864271
Target:  5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3'
miRNA:   3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 152502 0.66 0.871709
Target:  5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3'
miRNA:   3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 92724 0.66 0.864271
Target:  5'- uUCUGCC-GCugGgGCGCGAgCUGUUCa -3'
miRNA:   3'- -GGGUGGuCGugUaCGUGCUgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 58013 0.66 0.871709
Target:  5'- cCCCGCCcucGGCGaugAUGcCGCGcAgCUGCUCg -3'
miRNA:   3'- -GGGUGG---UCGUg--UAC-GUGC-UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 145778 0.66 0.864271
Target:  5'- cCCCAUCGGCGug-GCcgaaGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGUguaCGug--CUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 101981 0.66 0.864271
Target:  5'- gCCCGCCGcccGCGCGgggggucGCGCGACUcGCg- -3'
miRNA:   3'- -GGGUGGU---CGUGUa------CGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 52315 0.66 0.871709
Target:  5'- cCCCGCCGucGCccGCcgGCgACGGCCcgucGCUCu -3'
miRNA:   3'- -GGGUGGU--CG--UGuaCG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 2976 0.66 0.864271
Target:  5'- cCCCGCCcGCccGCAUGgGCGGCCcGUc- -3'
miRNA:   3'- -GGGUGGuCG--UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 23168 0.66 0.871709
Target:  5'- gCC-CUGGCGCAcaccgUGUACGugCUGCa- -3'
miRNA:   3'- gGGuGGUCGUGU-----ACGUGCugGACGag -5'
21551 5' -56.5 NC_004812.1 + 59451 0.66 0.87822
Target:  5'- aCCCGCUcggucgcGGCGCG-GUACGucuCCUGCa- -3'
miRNA:   3'- -GGGUGG-------UCGUGUaCGUGCu--GGACGag -5'
21551 5' -56.5 NC_004812.1 + 93065 0.66 0.864271
Target:  5'- cCCUGCCGGC-CGgaccCACGACCcuggaGCUCg -3'
miRNA:   3'- -GGGUGGUCGuGUac--GUGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 7755 0.66 0.871709
Target:  5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3'
miRNA:   3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 18772 0.66 0.872441
Target:  5'- gUCGCCAGCGCcaggaccucccgggGCcagGgGGCCUGCUCc -3'
miRNA:   3'- gGGUGGUCGUGua------------CG---UgCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 148907 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 23786 0.66 0.871709
Target:  5'- gCCAuCCGaCGCGUGCGCGGCUccaUGCg- -3'
miRNA:   3'- gGGU-GGUcGUGUACGUGCUGG---ACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.