miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 465 0.76 0.374854
Target:  5'- gCCGCCGGCGCGccugcgugcGCACGcGCCUGCUg -3'
miRNA:   3'- gGGUGGUCGUGUa--------CGUGC-UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 556 0.68 0.797794
Target:  5'- uCCCGCCccGGCGC--GCGCGGCC-GCg- -3'
miRNA:   3'- -GGGUGG--UCGUGuaCGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 1150 0.69 0.751128
Target:  5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3'
miRNA:   3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 2226 0.69 0.760708
Target:  5'- gCCCGcggcCCAGCGCAcGCGCGGCgCgGCg- -3'
miRNA:   3'- -GGGU----GGUCGUGUaCGUGCUG-GaCGag -5'
21551 5' -56.5 NC_004812.1 + 2976 0.66 0.864271
Target:  5'- cCCCGCCcGCccGCAUGgGCGGCCcGUc- -3'
miRNA:   3'- -GGGUGGuCG--UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 3151 0.69 0.760708
Target:  5'- -gCACCAGCACGcGCACGuCCUcggGgUCg -3'
miRNA:   3'- ggGUGGUCGUGUaCGUGCuGGA---CgAG- -5'
21551 5' -56.5 NC_004812.1 + 3859 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 3957 0.67 0.848772
Target:  5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3'
miRNA:   3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 3977 0.77 0.306277
Target:  5'- cCCCGCCGcGCGCcgGC-CGggcACCUGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGuaCGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 4634 0.66 0.885936
Target:  5'- gCCCACacgGGCGCggGCGCG-CCgGCg- -3'
miRNA:   3'- -GGGUGg--UCGUGuaCGUGCuGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 4898 0.67 0.815474
Target:  5'- gCCACggCGGCGCGcGCGCG-CCgccGCUCg -3'
miRNA:   3'- gGGUG--GUCGUGUaCGUGCuGGa--CGAG- -5'
21551 5' -56.5 NC_004812.1 + 5795 0.66 0.878933
Target:  5'- gCCCGCCucgggcugcggGGCuGCGggGCGCGGCggGCUCu -3'
miRNA:   3'- -GGGUGG-----------UCG-UGUa-CGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 5932 0.72 0.589758
Target:  5'- gCCGCCccggAGCGCggGgGCGACCggcgGCUCc -3'
miRNA:   3'- gGGUGG----UCGUGuaCgUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 7639 0.67 0.856623
Target:  5'- cCUCGCCGcGCGCcucGCcgACGACCcGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGua-CG--UGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 7755 0.66 0.871709
Target:  5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3'
miRNA:   3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 8041 0.66 0.885936
Target:  5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3'
miRNA:   3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 9416 1.12 0.001478
Target:  5'- aCCCACCAGCACAUGCACGACCUGCUCa -3'
miRNA:   3'- -GGGUGGUCGUGUACGUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 11889 0.76 0.335516
Target:  5'- -aCGCCGcGCACGUGCGCGACCUcgGCg- -3'
miRNA:   3'- ggGUGGU-CGUGUACGUGCUGGA--CGag -5'
21551 5' -56.5 NC_004812.1 + 12000 0.79 0.253748
Target:  5'- uCCCGCCgucaaaAGCGCAg--ACGACCUGCUCg -3'
miRNA:   3'- -GGGUGG------UCGUGUacgUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12227 0.67 0.840725
Target:  5'- gCCGCCAGCA---GCACGGgCUcGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCGUGCUgGA-CGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.