miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 9416 1.12 0.001478
Target:  5'- aCCCACCAGCACAUGCACGACCUGCUCa -3'
miRNA:   3'- -GGGUGGUCGUGUACGUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 65191 0.83 0.13581
Target:  5'- cCCCgACCGGgACGUGCGCGACUucgUGCUCa -3'
miRNA:   3'- -GGG-UGGUCgUGUACGUGCUGG---ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 27395 0.8 0.208851
Target:  5'- cUCCGCCGGCGCcgccgccGC-CGACCUGCUCu -3'
miRNA:   3'- -GGGUGGUCGUGua-----CGuGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 152903 0.8 0.208851
Target:  5'- cUCCGCCGGCGCcgccgccGC-CGACCUGCUCu -3'
miRNA:   3'- -GGGUGGUCGUGua-----CGuGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12000 0.79 0.253748
Target:  5'- uCCCGCCgucaaaAGCGCAg--ACGACCUGCUCg -3'
miRNA:   3'- -GGGUGG------UCGUGUacgUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 90412 0.79 0.253748
Target:  5'- aCCGCCAGgACAuaccccUGCAgGACCUGCUg -3'
miRNA:   3'- gGGUGGUCgUGU------ACGUgCUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 34878 0.77 0.299279
Target:  5'- cCCCGCCGcGCGCcgGCcCGggcACCUGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGuaCGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 19124 0.77 0.299279
Target:  5'- cCCCGCCAGCucgGCGUGgGCGGCCaGCg- -3'
miRNA:   3'- -GGGUGGUCG---UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 3977 0.77 0.306277
Target:  5'- cCCCGCCGcGCGCcgGC-CGggcACCUGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGuaCGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 146388 0.77 0.328019
Target:  5'- gCCCACuuuuccagaCAGC-CGUGCGCGGCCaGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGuGUACGUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 11889 0.76 0.335516
Target:  5'- -aCGCCGcGCACGUGCGCGACCUcgGCg- -3'
miRNA:   3'- ggGUGGU-CGUGUACGUGCUGGA--CGag -5'
21551 5' -56.5 NC_004812.1 + 465 0.76 0.374854
Target:  5'- gCCGCCGGCGCGccugcgugcGCACGcGCCUGCUg -3'
miRNA:   3'- gGGUGGUCGUGUa--------CGUGC-UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 31366 0.76 0.374854
Target:  5'- gCCGCCGGCGCGccugcgugcGCACGcGCCUGCUg -3'
miRNA:   3'- gGGUGGUCGUGUa--------CGUGC-UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 73013 0.76 0.378133
Target:  5'- aCCCACUGGCGCccGCugcuggagcggcuauGCGACCUGCa- -3'
miRNA:   3'- -GGGUGGUCGUGuaCG---------------UGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 56647 0.75 0.39144
Target:  5'- cCCCGCCGGCACGgcccaccgGCACGACgCggGCg- -3'
miRNA:   3'- -GGGUGGUCGUGUa-------CGUGCUG-Ga-CGag -5'
21551 5' -56.5 NC_004812.1 + 3859 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 129367 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 16905 0.75 0.426011
Target:  5'- gCCACCAgGCGCugcugcGCAUGGCCUGCg- -3'
miRNA:   3'- gGGUGGU-CGUGua----CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 83451 0.74 0.462333
Target:  5'- gCCCucggGCCAGCGCGUGCugGuCCgcgGCg- -3'
miRNA:   3'- -GGG----UGGUCGUGUACGugCuGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 41556 0.74 0.471667
Target:  5'- cUCCGCCGGCGCggGCugaGCGACgUGCa- -3'
miRNA:   3'- -GGGUGGUCGUGuaCG---UGCUGgACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.