miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 82261 0.72 0.588741
Target:  5'- cCCCACCAGCGCGcGCcGCaGGCUcgccaggUGCUCc -3'
miRNA:   3'- -GGGUGGUCGUGUaCG-UG-CUGG-------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 18550 0.72 0.549384
Target:  5'- gCgGCCAGCGCG-GCGCGgGCCcGCUCc -3'
miRNA:   3'- gGgUGGUCGUGUaCGUGC-UGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 142255 0.72 0.549384
Target:  5'- gCCCGCgCGGCcgGCAaGCACGugCgGCUCc -3'
miRNA:   3'- -GGGUG-GUCG--UGUaCGUGCugGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 70538 0.72 0.559408
Target:  5'- aCCGCCAGCGC--GCuGCGACCggUGCUUc -3'
miRNA:   3'- gGGUGGUCGUGuaCG-UGCUGG--ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 108851 0.72 0.559408
Target:  5'- gCCC-CCAGCGCcgcgGCGCuGACCUcGUUCg -3'
miRNA:   3'- -GGGuGGUCGUGua--CGUG-CUGGA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 153866 0.72 0.569483
Target:  5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 154282 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 114593 0.72 0.579602
Target:  5'- gCCC-CCGGUGC-UGCGCGAgCUGCg- -3'
miRNA:   3'- -GGGuGGUCGUGuACGUGCUgGACGag -5'
21551 5' -56.5 NC_004812.1 + 153701 0.72 0.579602
Target:  5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3'
miRNA:   3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 67095 0.72 0.549384
Target:  5'- aCCACCGGCGCgAUGCAguCGAagagGCUCg -3'
miRNA:   3'- gGGUGGUCGUG-UACGU--GCUgga-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 25339 0.73 0.490614
Target:  5'- gCCACCAGCcgGCGguggGCgGCGACCacggGCUCg -3'
miRNA:   3'- gGGUGGUCG--UGUa---CG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 41556 0.74 0.471667
Target:  5'- cUCCGCCGGCGCggGCugaGCGACgUGCa- -3'
miRNA:   3'- -GGGUGGUCGUGuaCG---UGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 152903 0.8 0.208851
Target:  5'- cUCCGCCGGCGCcgccgccGC-CGACCUGCUCu -3'
miRNA:   3'- -GGGUGGUCGUGua-----CGuGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12000 0.79 0.253748
Target:  5'- uCCCGCCgucaaaAGCGCAg--ACGACCUGCUCg -3'
miRNA:   3'- -GGGUGG------UCGUGUacgUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 19124 0.77 0.299279
Target:  5'- cCCCGCCAGCucgGCGUGgGCGGCCaGCg- -3'
miRNA:   3'- -GGGUGGUCG---UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 3977 0.77 0.306277
Target:  5'- cCCCGCCGcGCGCcgGC-CGggcACCUGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGuaCGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 465 0.76 0.374854
Target:  5'- gCCGCCGGCGCGccugcgugcGCACGcGCCUGCUg -3'
miRNA:   3'- gGGUGGUCGUGUa--------CGUGC-UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 129367 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 16905 0.75 0.426011
Target:  5'- gCCACCAgGCGCugcugcGCAUGGCCUGCg- -3'
miRNA:   3'- gGGUGGU-CGUGua----CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 100928 0.74 0.471667
Target:  5'- gCCCACCgccaccgacAGC-CAcUGgACGGCCUGCUCc -3'
miRNA:   3'- -GGGUGG---------UCGuGU-ACgUGCUGGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.