miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 62684 0.66 0.885936
Target:  5'- gUCGCCGuGCACGUGUACGGCaC-GCg- -3'
miRNA:   3'- gGGUGGU-CGUGUACGUGCUG-GaCGag -5'
21551 5' -56.5 NC_004812.1 + 53042 0.66 0.885246
Target:  5'- gCgCGCCAGCACGcggcagcUGCACcGCCaggcggcGCUCa -3'
miRNA:   3'- -GgGUGGUCGUGU-------ACGUGcUGGa------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 103152 0.66 0.883161
Target:  5'- gCCCGCUgcgucuggAGCGCGggggccgccgucaGCGCGGCCccggGCUCc -3'
miRNA:   3'- -GGGUGG--------UCGUGUa------------CGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 148684 0.66 0.881761
Target:  5'- cCCgGCC-GCGCcgGCGCGcccgcagcccccgacACCUGCg- -3'
miRNA:   3'- -GGgUGGuCGUGuaCGUGC---------------UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 5795 0.66 0.878933
Target:  5'- gCCCGCCucgggcugcggGGCuGCGggGCGCGGCggGCUCu -3'
miRNA:   3'- -GGGUGG-----------UCG-UGUa-CGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 60035 0.66 0.878933
Target:  5'- aCCAgCCGGCAgGUGUACucGCUgUGCUCg -3'
miRNA:   3'- gGGU-GGUCGUgUACGUGc-UGG-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 91166 0.66 0.878933
Target:  5'- aCUCGCgCAGCACGUcgucCACGcucGCCUGCg- -3'
miRNA:   3'- -GGGUG-GUCGUGUAc---GUGC---UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 73265 0.66 0.878933
Target:  5'- gCCGCCAGCA---GCGCGuCCagGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCGUGCuGGa-CGAg -5'
21551 5' -56.5 NC_004812.1 + 145170 0.66 0.878933
Target:  5'- --aACgGGCACGUGCACG-CCUGg-- -3'
miRNA:   3'- gggUGgUCGUGUACGUGCuGGACgag -5'
21551 5' -56.5 NC_004812.1 + 142305 0.66 0.878933
Target:  5'- cCCCggGCCGGCGCGgcgggGCGCGcCCUaCUg -3'
miRNA:   3'- -GGG--UGGUCGUGUa----CGUGCuGGAcGAg -5'
21551 5' -56.5 NC_004812.1 + 37612 0.66 0.878933
Target:  5'- aCCCGgCAGUcCcgGUGCGCGuCCagcUGCUCg -3'
miRNA:   3'- -GGGUgGUCGuG--UACGUGCuGG---ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 145305 0.66 0.878933
Target:  5'- cCCCGCCccgcGGCGCcccGCGCGGCgCgccucgugggcgUGCUCg -3'
miRNA:   3'- -GGGUGG----UCGUGua-CGUGCUG-G------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 65899 0.66 0.878933
Target:  5'- gCCC-CCaAGCGCAgggGCccguGgGugCUGCUCa -3'
miRNA:   3'- -GGGuGG-UCGUGUa--CG----UgCugGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 36696 0.66 0.878933
Target:  5'- gCCCGCCucgggcugcggGGCuGCGggGCGCGGCggGCUCu -3'
miRNA:   3'- -GGGUGG-----------UCG-UGUa-CGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 20988 0.66 0.878933
Target:  5'- cUCCAgCAGCACcagGUGCACGaagcGCgUGCg- -3'
miRNA:   3'- -GGGUgGUCGUG---UACGUGC----UGgACGag -5'
21551 5' -56.5 NC_004812.1 + 48983 0.66 0.878933
Target:  5'- gCCCACC-GCGCcaaaAUGCGCcGCCUgGCg- -3'
miRNA:   3'- -GGGUGGuCGUG----UACGUGcUGGA-CGag -5'
21551 5' -56.5 NC_004812.1 + 59396 0.66 0.878933
Target:  5'- cCCCACgCAGCGCGUgGCACcGCCa---- -3'
miRNA:   3'- -GGGUG-GUCGUGUA-CGUGcUGGacgag -5'
21551 5' -56.5 NC_004812.1 + 116540 0.66 0.87822
Target:  5'- gCCCGCCGcccggaaaagcGCACGaGCggccgcgGCGGCC-GCUCg -3'
miRNA:   3'- -GGGUGGU-----------CGUGUaCG-------UGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 59451 0.66 0.87822
Target:  5'- aCCCGCUcggucgcGGCGCG-GUACGucuCCUGCa- -3'
miRNA:   3'- -GGGUGG-------UCGUGUaCGUGCu--GGACGag -5'
21551 5' -56.5 NC_004812.1 + 76606 0.66 0.87822
Target:  5'- cCCCACCuuucuggAGUACccguccgGaCGCGGCCUGCg- -3'
miRNA:   3'- -GGGUGG-------UCGUGua-----C-GUGCUGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.