miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 12506 0.7 0.671496
Target:  5'- gCCCguACUggggGGCGCAUGUuCG-CCUGCUCg -3'
miRNA:   3'- -GGG--UGG----UCGUGUACGuGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12663 0.69 0.760708
Target:  5'- gCCCGCC-GCGCAUGgagccgauCAUGACCUcGCa- -3'
miRNA:   3'- -GGGUGGuCGUGUAC--------GUGCUGGA-CGag -5'
21551 5' -56.5 NC_004812.1 + 14345 0.68 0.767346
Target:  5'- cCCCACCuGCGCcUGCACGugguugccgcgaaaGCCgaaCUCg -3'
miRNA:   3'- -GGGUGGuCGUGuACGUGC--------------UGGac-GAG- -5'
21551 5' -56.5 NC_004812.1 + 14617 0.7 0.701845
Target:  5'- aCCACUgcagccggGGCACccGCGCGGCCUccagccgguGCUCc -3'
miRNA:   3'- gGGUGG--------UCGUGuaCGUGCUGGA---------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 14999 0.71 0.624478
Target:  5'- aCCCGCCAGCuGCAggccgcggucuucgGCGCG--CUGCUCa -3'
miRNA:   3'- -GGGUGGUCG-UGUa-------------CGUGCugGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 15538 0.71 0.610156
Target:  5'- cCCCGCCGGCGCGcagcgcggagagUGCGuCGuCCUGUg- -3'
miRNA:   3'- -GGGUGGUCGUGU------------ACGU-GCuGGACGag -5'
21551 5' -56.5 NC_004812.1 + 15742 0.73 0.519672
Target:  5'- aCCCACCcccGCGCcuUGCGCG-CCUGCg- -3'
miRNA:   3'- -GGGUGGu--CGUGu-ACGUGCuGGACGag -5'
21551 5' -56.5 NC_004812.1 + 16695 0.71 0.63062
Target:  5'- cCCCgACCGGCGgGUGCGCGagcgaccgcgggGCCggucccGCUCg -3'
miRNA:   3'- -GGG-UGGUCGUgUACGUGC------------UGGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 16844 0.66 0.892715
Target:  5'- gCCGCCcuuaGGCGCGcgGUcgcgggggaccGCGACCUGgUCg -3'
miRNA:   3'- gGGUGG----UCGUGUa-CG-----------UGCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 16905 0.75 0.426011
Target:  5'- gCCACCAgGCGCugcugcGCAUGGCCUGCg- -3'
miRNA:   3'- gGGUGGU-CGUGua----CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 18337 0.7 0.701845
Target:  5'- gCCCGCagGGCGCGgcGCGCGACCgcgGC-Cg -3'
miRNA:   3'- -GGGUGg-UCGUGUa-CGUGCUGGa--CGaG- -5'
21551 5' -56.5 NC_004812.1 + 18550 0.72 0.549384
Target:  5'- gCgGCCAGCGCG-GCGCGgGCCcGCUCc -3'
miRNA:   3'- gGgUGGUCGUGUaCGUGC-UGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 18772 0.66 0.872441
Target:  5'- gUCGCCAGCGCcaggaccucccgggGCcagGgGGCCUGCUCc -3'
miRNA:   3'- gGGUGGUCGUGua------------CG---UgCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 18904 0.68 0.788725
Target:  5'- gUCCACguGCAC---CugGGCCUGCUg -3'
miRNA:   3'- -GGGUGguCGUGuacGugCUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 19124 0.77 0.299279
Target:  5'- cCCCGCCAGCucgGCGUGgGCGGCCaGCg- -3'
miRNA:   3'- -GGGUGGUCG---UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 19396 0.67 0.848772
Target:  5'- -gCACCAggacGCGCGcgGuCACGGCCUGCg- -3'
miRNA:   3'- ggGUGGU----CGUGUa-C-GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 20988 0.66 0.878933
Target:  5'- cUCCAgCAGCACcagGUGCACGaagcGCgUGCg- -3'
miRNA:   3'- -GGGUgGUCGUG---UACGUGC----UGgACGag -5'
21551 5' -56.5 NC_004812.1 + 23168 0.66 0.871709
Target:  5'- gCC-CUGGCGCAcaccgUGUACGugCUGCa- -3'
miRNA:   3'- gGGuGGUCGUGU-----ACGUGCugGACGag -5'
21551 5' -56.5 NC_004812.1 + 23786 0.66 0.871709
Target:  5'- gCCAuCCGaCGCGUGCGCGGCUccaUGCg- -3'
miRNA:   3'- gGGU-GGUcGUGUACGUGCUGG---ACGag -5'
21551 5' -56.5 NC_004812.1 + 24794 0.67 0.856623
Target:  5'- aUgAUCAGgGCGacggGCACGGCCUGgUCg -3'
miRNA:   3'- gGgUGGUCgUGUa---CGUGCUGGACgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.