miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 152415 0.66 0.939553
Target:  5'- -cGCGGUccccGCCGUUCCCGccgGGUaCGGCGc -3'
miRNA:   3'- caUGUCG----UGGUAGGGGCa--CCA-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 102240 0.66 0.94419
Target:  5'- -gGCGGC-CCugCCCCGgaacaccuggGGUCGGCGa -3'
miRNA:   3'- caUGUCGuGGuaGGGGCa---------CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 21241 0.66 0.94419
Target:  5'- -gACGGgACC-UCCCCGUGGccccagaAGCGc -3'
miRNA:   3'- caUGUCgUGGuAGGGGCACCag-----UUGC- -5'
21558 3' -54.5 NC_004812.1 + 42001 0.66 0.939553
Target:  5'- -cGCGcGCcCCAUCgCCG-GGUCGAUGg -3'
miRNA:   3'- caUGU-CGuGGUAGgGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 130242 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 151188 0.66 0.934674
Target:  5'- ---gGGCGCUGUCCCCGccGUCGuccGCGg -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 144866 0.66 0.934674
Target:  5'- gGUGCGGUucgaCGUCCCCGaGGagugCGGCGa -3'
miRNA:   3'- -CAUGUCGug--GUAGGGGCaCCa---GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 26907 0.66 0.939553
Target:  5'- -cGCGGUccccGCCGUUCCCGccgGGUaCGGCGc -3'
miRNA:   3'- caUGUCG----UGGUAGGGGCa--CCA-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 4734 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 119951 0.66 0.934674
Target:  5'- cUGCuGaCGCUGUCCCUGUGGgccugggCGGCGc -3'
miRNA:   3'- cAUGuC-GUGGUAGGGGCACCa------GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 2184 0.67 0.929554
Target:  5'- -gGCGGCGgCGUCgUCGUcGUCGGCGa -3'
miRNA:   3'- caUGUCGUgGUAGgGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 101732 0.67 0.918583
Target:  5'- -gGCGGCAUCggCCCgCGgucGGUCGugGu -3'
miRNA:   3'- caUGUCGUGGuaGGG-GCa--CCAGUugC- -5'
21558 3' -54.5 NC_004812.1 + 17189 0.67 0.929554
Target:  5'- --cCAGCACCGgccgCCCCG-GuGUCGuucGCGg -3'
miRNA:   3'- cauGUCGUGGUa---GGGGCaC-CAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 101283 0.67 0.912734
Target:  5'- --cCAGCAUCAcCCaCCGguucuucgagcUGGUCAACGg -3'
miRNA:   3'- cauGUCGUGGUaGG-GGC-----------ACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 82967 0.67 0.906644
Target:  5'- aGUACAuGCACCucacgcUCCCCGcGG-CGugGg -3'
miRNA:   3'- -CAUGU-CGUGGu-----AGGGGCaCCaGUugC- -5'
21558 3' -54.5 NC_004812.1 + 86616 0.67 0.918583
Target:  5'- -cGCGGCGCgGUugCCCagcggGUGGUCGugGg -3'
miRNA:   3'- caUGUCGUGgUA--GGGg----CACCAGUugC- -5'
21558 3' -54.5 NC_004812.1 + 98597 0.67 0.931631
Target:  5'- -cGCGGCAUCAUCgCCGagggcggggcgucggUGGcCAGCGc -3'
miRNA:   3'- caUGUCGUGGUAGgGGC---------------ACCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 104544 0.67 0.918583
Target:  5'- cUAUAGCACC--CCCgGUGGcCGAUGc -3'
miRNA:   3'- cAUGUCGUGGuaGGGgCACCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 130455 0.67 0.926364
Target:  5'- -gACGGCaacgacacagacucgACCGUCgagCCCGggUGGUCGGCGg -3'
miRNA:   3'- caUGUCG---------------UGGUAG---GGGC--ACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 3439 0.67 0.929554
Target:  5'- -cGCGGCGCCAgCCgCCGcgggGGUCGggcccgGCGg -3'
miRNA:   3'- caUGUCGUGGUaGG-GGCa---CCAGU------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.