miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 21731 0.66 0.934674
Target:  5'- -cGCGGUACUcgCCCCacGUGGU-GACGu -3'
miRNA:   3'- caUGUCGUGGuaGGGG--CACCAgUUGC- -5'
21558 3' -54.5 NC_004812.1 + 48496 0.66 0.943737
Target:  5'- cGUACAGCGgCucggcUCCCaCGgcgcaguUGGUCAGCa -3'
miRNA:   3'- -CAUGUCGUgGu----AGGG-GC-------ACCAGUUGc -5'
21558 3' -54.5 NC_004812.1 + 26907 0.66 0.939553
Target:  5'- -cGCGGUccccGCCGUUCCCGccgGGUaCGGCGc -3'
miRNA:   3'- caUGUCG----UGGUAGGGGCa--CCA-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 55825 0.66 0.952751
Target:  5'- -cGCAGCGCC-UCUUCGUcgcucugcucggGGUUGACGa -3'
miRNA:   3'- caUGUCGUGGuAGGGGCA------------CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 150852 0.66 0.934674
Target:  5'- cUGCuGaCGCUGUCCCUGUGGgccugggCGGCGc -3'
miRNA:   3'- cAUGuC-GUGGUAGGGGCACCa------GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 30944 0.66 0.952751
Target:  5'- -cGCGGC-CCGaggccUCCCCGagGGUCAgguACGc -3'
miRNA:   3'- caUGUCGuGGU-----AGGGGCa-CCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 25680 0.66 0.934674
Target:  5'- ---gGGCGCUGUCCCCGccGUCGuccGCGg -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 26174 0.66 0.939553
Target:  5'- --cCAGCGCCGcCUCCGcGGgccgCAGCGa -3'
miRNA:   3'- cauGUCGUGGUaGGGGCaCCa---GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 130242 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 103616 0.66 0.956681
Target:  5'- cGUGCuacaGCCG-CCCCcUGGUCAGCu -3'
miRNA:   3'- -CAUGucg-UGGUaGGGGcACCAGUUGc -5'
21558 3' -54.5 NC_004812.1 + 4734 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 119951 0.66 0.934674
Target:  5'- cUGCuGaCGCUGUCCCUGUGGgccugggCGGCGc -3'
miRNA:   3'- cAUGuC-GUGGUAGGGGCACCa------GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 15123 0.66 0.94419
Target:  5'- gGUACGGCGgCGcCCCCGacGG-CGACGu -3'
miRNA:   3'- -CAUGUCGUgGUaGGGGCa-CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 42001 0.66 0.939553
Target:  5'- -cGCGcGCcCCAUCgCCG-GGUCGAUGg -3'
miRNA:   3'- caUGU-CGuGGUAGgGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 151188 0.66 0.934674
Target:  5'- ---gGGCGCUGUCCCCGccGUCGuccGCGg -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 144866 0.66 0.934674
Target:  5'- gGUGCGGUucgaCGUCCCCGaGGagugCGGCGa -3'
miRNA:   3'- -CAUGUCGug--GUAGGGGCaCCa---GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 18858 0.66 0.948589
Target:  5'- --uCGGC-CCAgcgggUCCCGggGGUCGGCGg -3'
miRNA:   3'- cauGUCGuGGUa----GGGGCa-CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 102240 0.66 0.94419
Target:  5'- -gGCGGC-CCugCCCCGgaacaccuggGGUCGGCGa -3'
miRNA:   3'- caUGUCGuGGuaGGGGCa---------CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 151477 0.66 0.948589
Target:  5'- -gACGcCGCCGUCCCCG-GG-CGGCc -3'
miRNA:   3'- caUGUcGUGGUAGGGGCaCCaGUUGc -5'
21558 3' -54.5 NC_004812.1 + 152415 0.66 0.939553
Target:  5'- -cGCGGUccccGCCGUUCCCGccgGGUaCGGCGc -3'
miRNA:   3'- caUGUCG----UGGUAGGGGCa--CCA-GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.