miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 2817 1.1 0.003735
Target:  5'- cGUACAGCACCAUCCCCGUGGUCAACGa -3'
miRNA:   3'- -CAUGUCGUGGUAGGGGCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 33718 1.1 0.003735
Target:  5'- cGUACAGCACCAUCCCCGUGGUCAACGa -3'
miRNA:   3'- -CAUGUCGUGGUAGGGGCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 59295 0.81 0.257345
Target:  5'- -cGCGGCACCcgCCCgccgcgagcuCGUGGUCGACGg -3'
miRNA:   3'- caUGUCGUGGuaGGG----------GCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 3145 0.76 0.488865
Target:  5'- cGUAgAGCACCAgcacgcgcacgUCCUCGgGGUCGGCGa -3'
miRNA:   3'- -CAUgUCGUGGU-----------AGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 128654 0.76 0.488865
Target:  5'- cGUAgAGCACCAgcacgcgcacgUCCUCGgGGUCGGCGa -3'
miRNA:   3'- -CAUgUCGUGGU-----------AGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 77178 0.75 0.528015
Target:  5'- -gGCGGCGCCGUCCCCGccgccgGGcUCGaacGCGg -3'
miRNA:   3'- caUGUCGUGGUAGGGGCa-----CC-AGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 23997 0.73 0.619559
Target:  5'- --cCAGCACCGcCCCCGgccGGUCGAgGa -3'
miRNA:   3'- cauGUCGUGGUaGGGGCa--CCAGUUgC- -5'
21558 3' -54.5 NC_004812.1 + 24051 0.73 0.619559
Target:  5'- --cCAGCACCGcCCCCGgccGGUCGAgGa -3'
miRNA:   3'- cauGUCGUGGUaGGGGCa--CCAGUUgC- -5'
21558 3' -54.5 NC_004812.1 + 91106 0.72 0.681318
Target:  5'- -gGC-GCGCCGUccccucgcCCCCGUGGUCcGCGc -3'
miRNA:   3'- caUGuCGUGGUA--------GGGGCACCAGuUGC- -5'
21558 3' -54.5 NC_004812.1 + 60764 0.72 0.711759
Target:  5'- -cACAGCGCC-UCgCCCGUGGUUu-CGu -3'
miRNA:   3'- caUGUCGUGGuAG-GGGCACCAGuuGC- -5'
21558 3' -54.5 NC_004812.1 + 137121 0.72 0.711759
Target:  5'- aGUGCAGcCACCccgaguAUCCCCagcgggucGUGGUCAagGCGg -3'
miRNA:   3'- -CAUGUC-GUGG------UAGGGG--------CACCAGU--UGC- -5'
21558 3' -54.5 NC_004812.1 + 74914 0.71 0.74158
Target:  5'- -aGCAGCuCCG-CCCCGUGGccCAGCu -3'
miRNA:   3'- caUGUCGuGGUaGGGGCACCa-GUUGc -5'
21558 3' -54.5 NC_004812.1 + 35184 0.7 0.779937
Target:  5'- -gGCGGCACCAggcugacggggUCUCCGUugcagaGGUCGACc -3'
miRNA:   3'- caUGUCGUGGU-----------AGGGGCA------CCAGUUGc -5'
21558 3' -54.5 NC_004812.1 + 111667 0.7 0.789213
Target:  5'- -cGCucguGUACCGcUCCCCGUcGUCGGCGa -3'
miRNA:   3'- caUGu---CGUGGU-AGGGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 68545 0.7 0.789213
Target:  5'- cGUACAGCGuuucaaacuCC-UCCCCGUGGa-AGCGg -3'
miRNA:   3'- -CAUGUCGU---------GGuAGGGGCACCagUUGC- -5'
21558 3' -54.5 NC_004812.1 + 53556 0.7 0.797438
Target:  5'- ----cGCGCCcgacgcaGUCCCCGaGGUCGACGc -3'
miRNA:   3'- cauguCGUGG-------UAGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 79349 0.7 0.798345
Target:  5'- -gGCAGCGCCAgcggcgcCCCCGcgagGG-CAGCGc -3'
miRNA:   3'- caUGUCGUGGUa------GGGGCa---CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 125410 0.69 0.82479
Target:  5'- cUACAGCACCAgcgggacgaCCCUGcGGaCGACGg -3'
miRNA:   3'- cAUGUCGUGGUa--------GGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 130842 0.69 0.83326
Target:  5'- -cGgGGCGCCG-CCCgG-GGUCGGCGg -3'
miRNA:   3'- caUgUCGUGGUaGGGgCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 96649 0.69 0.83326
Target:  5'- --cCGGCGCCGcgcgaCCCCGUGGgcCAGCa -3'
miRNA:   3'- cauGUCGUGGUa----GGGGCACCa-GUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.