miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 79602 0.68 0.864448
Target:  5'- cGUACAGCugCAgcacggCCgcggugagggcggCCGUGGcCGGCGg -3'
miRNA:   3'- -CAUGUCGugGUa-----GG-------------GGCACCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 96649 0.69 0.83326
Target:  5'- --cCGGCGCCGcgcgaCCCCGUGGgcCAGCa -3'
miRNA:   3'- cauGUCGUGGUa----GGGGCACCa-GUUGc -5'
21558 3' -54.5 NC_004812.1 + 130842 0.69 0.83326
Target:  5'- -cGgGGCGCCG-CCCgG-GGUCGGCGg -3'
miRNA:   3'- caUgUCGUGGUaGGGgCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 9486 0.69 0.841544
Target:  5'- -aGCAGCAcgcCCGUCCCCccggguUGcGUCGACGc -3'
miRNA:   3'- caUGUCGU---GGUAGGGGc-----AC-CAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 128427 0.69 0.849634
Target:  5'- -gACGGCGCCggcgaaggccagGUCCCgCGUGGagAGCa -3'
miRNA:   3'- caUGUCGUGG------------UAGGG-GCACCagUUGc -5'
21558 3' -54.5 NC_004812.1 + 52306 0.69 0.856744
Target:  5'- ---aGGCGCCGUCCCCGccGUCGcccgccgGCGa -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU-------UGC- -5'
21558 3' -54.5 NC_004812.1 + 3432 0.69 0.857524
Target:  5'- --cCGGCGCCGccgcgccCCCCGUGGUCccCGu -3'
miRNA:   3'- cauGUCGUGGUa------GGGGCACCAGuuGC- -5'
21558 3' -54.5 NC_004812.1 + 20008 0.69 0.857524
Target:  5'- -cGCGGCGCCGUCUCCGcgcGcGUCG-CGg -3'
miRNA:   3'- caUGUCGUGGUAGGGGCa--C-CAGUuGC- -5'
21558 3' -54.5 NC_004812.1 + 52335 0.68 0.864448
Target:  5'- -gACGGC-CCGUCgCUcuugagcuccuugGUGGUCAGCGg -3'
miRNA:   3'- caUGUCGuGGUAGgGG-------------CACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 35750 0.69 0.83326
Target:  5'- cUACAGCGCCAgcCCCCGcaggGGggaGGCGu -3'
miRNA:   3'- cAUGUCGUGGUa-GGGGCa---CCag-UUGC- -5'
21558 3' -54.5 NC_004812.1 + 79349 0.7 0.798345
Target:  5'- -gGCAGCGCCAgcggcgcCCCCGcgagGG-CAGCGc -3'
miRNA:   3'- caUGUCGUGGUa------GGGGCa---CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 53556 0.7 0.797438
Target:  5'- ----cGCGCCcgacgcaGUCCCCGaGGUCGACGc -3'
miRNA:   3'- cauguCGUGG-------UAGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 128654 0.76 0.488865
Target:  5'- cGUAgAGCACCAgcacgcgcacgUCCUCGgGGUCGGCGa -3'
miRNA:   3'- -CAUgUCGUGGU-----------AGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 77178 0.75 0.528015
Target:  5'- -gGCGGCGCCGUCCCCGccgccgGGcUCGaacGCGg -3'
miRNA:   3'- caUGUCGUGGUAGGGGCa-----CC-AGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 23997 0.73 0.619559
Target:  5'- --cCAGCACCGcCCCCGgccGGUCGAgGa -3'
miRNA:   3'- cauGUCGUGGUaGGGGCa--CCAGUUgC- -5'
21558 3' -54.5 NC_004812.1 + 24051 0.73 0.619559
Target:  5'- --cCAGCACCGcCCCCGgccGGUCGAgGa -3'
miRNA:   3'- cauGUCGUGGUaGGGGCa--CCAGUUgC- -5'
21558 3' -54.5 NC_004812.1 + 91106 0.72 0.681318
Target:  5'- -gGC-GCGCCGUccccucgcCCCCGUGGUCcGCGc -3'
miRNA:   3'- caUGuCGUGGUA--------GGGGCACCAGuUGC- -5'
21558 3' -54.5 NC_004812.1 + 137121 0.72 0.711759
Target:  5'- aGUGCAGcCACCccgaguAUCCCCagcgggucGUGGUCAagGCGg -3'
miRNA:   3'- -CAUGUC-GUGG------UAGGGG--------CACCAGU--UGC- -5'
21558 3' -54.5 NC_004812.1 + 60764 0.72 0.711759
Target:  5'- -cACAGCGCC-UCgCCCGUGGUUu-CGu -3'
miRNA:   3'- caUGUCGUGGuAG-GGGCACCAGuuGC- -5'
21558 3' -54.5 NC_004812.1 + 35184 0.7 0.779937
Target:  5'- -gGCGGCACCAggcugacggggUCUCCGUugcagaGGUCGACc -3'
miRNA:   3'- caUGUCGUGGU-----------AGGGGCA------CCAGUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.