miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 1220 0.68 0.879927
Target:  5'- -gGCGGCGCCGcgggggcuccUCCCCGcccgGG-CGGCGc -3'
miRNA:   3'- caUGUCGUGGU----------AGGGGCa---CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 2184 0.67 0.929554
Target:  5'- -gGCGGCGgCGUCgUCGUcGUCGGCGa -3'
miRNA:   3'- caUGUCGUgGUAGgGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 2817 1.1 0.003735
Target:  5'- cGUACAGCACCAUCCCCGUGGUCAACGa -3'
miRNA:   3'- -CAUGUCGUGGUAGGGGCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 2919 0.69 0.849634
Target:  5'- -gACGGCGCCggcgaaggccagGUCCCgCGUGGagAGCa -3'
miRNA:   3'- caUGUCGUGG------------UAGGG-GCACCagUUGc -5'
21558 3' -54.5 NC_004812.1 + 3145 0.76 0.488865
Target:  5'- cGUAgAGCACCAgcacgcgcacgUCCUCGgGGUCGGCGa -3'
miRNA:   3'- -CAUgUCGUGGU-----------AGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 3432 0.69 0.857524
Target:  5'- --cCGGCGCCGccgcgccCCCCGUGGUCccCGu -3'
miRNA:   3'- cauGUCGUGGUa------GGGGCACCAGuuGC- -5'
21558 3' -54.5 NC_004812.1 + 3439 0.67 0.929554
Target:  5'- -cGCGGCGCCAgCCgCCGcgggGGUCGggcccgGCGg -3'
miRNA:   3'- caUGUCGUGGUaGG-GGCa---CCAGU------UGC- -5'
21558 3' -54.5 NC_004812.1 + 4183 0.68 0.900315
Target:  5'- -cGCGGCGCCGUaCCCGgcgGGaaCGGCGg -3'
miRNA:   3'- caUGUCGUGGUAgGGGCa--CCa-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 4734 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 5334 0.69 0.83326
Target:  5'- -cGgGGCGCCG-CCCgG-GGUCGGCGg -3'
miRNA:   3'- caUgUCGUGGUaGGGgCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 8899 0.66 0.952346
Target:  5'- cGUACAGCcccccgcGCCAcacgacCCCCGgGGUUGAUGa -3'
miRNA:   3'- -CAUGUCG-------UGGUa-----GGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 9486 0.69 0.841544
Target:  5'- -aGCAGCAcgcCCGUCCCCccggguUGcGUCGACGc -3'
miRNA:   3'- caUGUCGU---GGUAGGGGc-----AC-CAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 12119 0.68 0.893751
Target:  5'- -cGCAGgACCAgcgUCCCGuUGGUC-ACGu -3'
miRNA:   3'- caUGUCgUGGUa--GGGGC-ACCAGuUGC- -5'
21558 3' -54.5 NC_004812.1 + 15123 0.66 0.94419
Target:  5'- gGUACGGCGgCGcCCCCGacGG-CGACGu -3'
miRNA:   3'- -CAUGUCGUgGUaGGGGCa-CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 15334 0.68 0.872676
Target:  5'- -aGCGGCGCCAggugggCCCCGcGGaagCGACc -3'
miRNA:   3'- caUGUCGUGGUa-----GGGGCaCCa--GUUGc -5'
21558 3' -54.5 NC_004812.1 + 17189 0.67 0.929554
Target:  5'- --cCAGCACCGgccgCCCCG-GuGUCGuucGCGg -3'
miRNA:   3'- cauGUCGUGGUa---GGGGCaC-CAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 18858 0.66 0.948589
Target:  5'- --uCGGC-CCAgcgggUCCCGggGGUCGGCGg -3'
miRNA:   3'- cauGUCGuGGUa----GGGGCa-CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 20008 0.69 0.857524
Target:  5'- -cGCGGCGCCGUCUCCGcgcGcGUCG-CGg -3'
miRNA:   3'- caUGUCGUGGUAGGGGCa--C-CAGUuGC- -5'
21558 3' -54.5 NC_004812.1 + 21241 0.66 0.94419
Target:  5'- -gACGGgACC-UCCCCGUGGccccagaAGCGc -3'
miRNA:   3'- caUGUCgUGGuAGGGGCACCag-----UUGC- -5'
21558 3' -54.5 NC_004812.1 + 21731 0.66 0.934674
Target:  5'- -cGCGGUACUcgCCCCacGUGGU-GACGu -3'
miRNA:   3'- caUGUCGUGGuaGGGG--CACCAgUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.