miRNA display CGI


Results 21 - 40 of 804 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 73449 0.66 0.60681
Target:  5'- cCGCGcGCcaCGGCGCCagggggucgGAGGACgacagcuuGCCGUGg -3'
miRNA:   3'- -GCGC-CGc-GCUGCGG---------CUCCUG--------CGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 68125 0.66 0.587688
Target:  5'- gGCGGcCGCGGCGaCGAaGGGC-CCGg- -3'
miRNA:   3'- gCGCC-GCGCUGCgGCU-CCUGcGGCac -5'
21558 5' -63.5 NC_004812.1 + 95866 0.66 0.597238
Target:  5'- gCGCgGGUGCGGuggGCCGAGGGgGCgGg- -3'
miRNA:   3'- -GCG-CCGCGCUg--CGGCUCCUgCGgCac -5'
21558 5' -63.5 NC_004812.1 + 121973 0.66 0.591505
Target:  5'- aGCGGCGggccugggcugggccUGAgCGCCGGgcgggacuuGGGCGCCGg- -3'
miRNA:   3'- gCGCCGC---------------GCU-GCGGCU---------CCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 145613 0.66 0.60681
Target:  5'- gGCGGaccCGUGGucCGCCGGGGcGCGCCa-- -3'
miRNA:   3'- gCGCC---GCGCU--GCGGCUCC-UGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 90611 0.66 0.597238
Target:  5'- -cCGGCgGCGAUGUCG-GG-CGUCGUGa -3'
miRNA:   3'- gcGCCG-CGCUGCGGCuCCuGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 132995 0.66 0.60681
Target:  5'- gGCGGcCGCgcgGACGaCCG-GGGCGCCc-- -3'
miRNA:   3'- gCGCC-GCG---CUGC-GGCuCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 15540 0.66 0.597238
Target:  5'- cCGcCGGCGCGcaGCGCgGAGaGuGCGUCGUc -3'
miRNA:   3'- -GC-GCCGCGC--UGCGgCUC-C-UGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 130221 0.66 0.60681
Target:  5'- gGCGGC-UGuCGCCcAGGcCGCCGUa -3'
miRNA:   3'- gCGCCGcGCuGCGGcUCCuGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 83812 0.66 0.587688
Target:  5'- cCGgGGCGggaguugccCGACG-CGAGGGCGCCc-- -3'
miRNA:   3'- -GCgCCGC---------GCUGCgGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 96162 0.66 0.597238
Target:  5'- cCGCuGGUucgaggGCGGCGgCGAGGugGUCGc- -3'
miRNA:   3'- -GCG-CCG------CGCUGCgGCUCCugCGGCac -5'
21558 5' -63.5 NC_004812.1 + 5889 0.66 0.616399
Target:  5'- gCGCgGGCGCGG-GCUcaGGGGcCGCCGg- -3'
miRNA:   3'- -GCG-CCGCGCUgCGG--CUCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 55517 0.66 0.60681
Target:  5'- uCGcCGGCaGCaccuCGCCGuGGACGCUGa- -3'
miRNA:   3'- -GC-GCCG-CGcu--GCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3029 0.66 0.60681
Target:  5'- aCGCGGacaGCGACGaggacagcgaCGAGGACGaggaCGa- -3'
miRNA:   3'- -GCGCCg--CGCUGCg---------GCUCCUGCg---GCac -5'
21558 5' -63.5 NC_004812.1 + 124910 0.66 0.616399
Target:  5'- gGCcGgGCGGCGgCGGGGGCGgCGg- -3'
miRNA:   3'- gCGcCgCGCUGCgGCUCCUGCgGCac -5'
21558 5' -63.5 NC_004812.1 + 5027 0.66 0.587688
Target:  5'- gGUGGgGCGGCaGgCGGGGcaGCGCCGc- -3'
miRNA:   3'- gCGCCgCGCUG-CgGCUCC--UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 107911 0.66 0.601064
Target:  5'- gGgGGUGCGucccccagccacagaGCGCCccGAGGAgGCCGg- -3'
miRNA:   3'- gCgCCGCGC---------------UGCGG--CUCCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 94813 0.66 0.610644
Target:  5'- cCGCGGCG-GugGCUggagguguucguccuGGGGcACGCCGc- -3'
miRNA:   3'- -GCGCCGCgCugCGG---------------CUCC-UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 55289 0.66 0.60681
Target:  5'- uGUGGguCGCGugGUCGAagaGGGgGCCGUu -3'
miRNA:   3'- gCGCC--GCGCugCGGCU---CCUgCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 151116 0.66 0.60681
Target:  5'- cCGCGGC-CGcCGCCGc---CGCCGUGu -3'
miRNA:   3'- -GCGCCGcGCuGCGGCuccuGCGGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.