miRNA display CGI


Results 1 - 20 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 69447 0.65 0.643282
Target:  5'- aCGCGGCGCauccucugucgcGCgGCCGAGcACGCCcUGg -3'
miRNA:   3'- -GCGCCGCGc-----------UG-CGGCUCcUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 94970 0.65 0.644242
Target:  5'- gGcCGGCcuuguacGCcAUGCUGGGGAuCGCCGUGu -3'
miRNA:   3'- gC-GCCG-------CGcUGCGGCUCCU-GCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 46587 0.65 0.642322
Target:  5'- gCGCGGCcggguagcacaggaGCGGCGCgaCGGGGugGCg--- -3'
miRNA:   3'- -GCGCCG--------------CGCUGCG--GCUCCugCGgcac -5'
21558 5' -63.5 NC_004812.1 + 5714 0.65 0.644242
Target:  5'- gGgGGCGgGGgucUGCCgcgggagGAGGGCGCCGg- -3'
miRNA:   3'- gCgCCGCgCU---GCGG-------CUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 85641 0.65 0.644242
Target:  5'- cCGCGGUGCucucccgGGCagGUCGAGG-CGCCGc- -3'
miRNA:   3'- -GCGCCGCG-------CUG--CGGCUCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 71695 0.65 0.642322
Target:  5'- gGUGGCGCaGAUGCCcgccccgcagcggcGAcGGugGgCGUGg -3'
miRNA:   3'- gCGCCGCG-CUGCGG--------------CU-CCugCgGCAC- -5'
21558 5' -63.5 NC_004812.1 + 36615 0.65 0.644242
Target:  5'- gGgGGCGgGGgucUGCCgcgggagGAGGGCGCCGg- -3'
miRNA:   3'- gCgCCGCgCU---GCGG-------CUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 113032 0.66 0.597238
Target:  5'- gGCGG-GCG-CGCCGGacGGACgGCCGc- -3'
miRNA:   3'- gCGCCgCGCuGCGGCU--CCUG-CGGCac -5'
21558 5' -63.5 NC_004812.1 + 5027 0.66 0.587688
Target:  5'- gGUGGgGCGGCaGgCGGGGcaGCGCCGc- -3'
miRNA:   3'- gCGCCgCGCUG-CgGCUCC--UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 96162 0.66 0.597238
Target:  5'- cCGCuGGUucgaggGCGGCGgCGAGGugGUCGc- -3'
miRNA:   3'- -GCG-CCG------CGCUGCgGCUCCugCGGCac -5'
21558 5' -63.5 NC_004812.1 + 151738 0.66 0.596282
Target:  5'- --gGGCGCGACGCCacGGGccgcuucacggccGCGCCGc- -3'
miRNA:   3'- gcgCCGCGCUGCGGc-UCC-------------UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 42581 0.66 0.587688
Target:  5'- aGCGacGCGCG-CGCCGAcGGCGagaCCGUGc -3'
miRNA:   3'- gCGC--CGCGCuGCGGCUcCUGC---GGCAC- -5'
21558 5' -63.5 NC_004812.1 + 146319 0.66 0.597238
Target:  5'- gCGCucaGGCGuCGGCGCCGGcaaacGcGCGCCGUc -3'
miRNA:   3'- -GCG---CCGC-GCUGCGGCU-----CcUGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 101824 0.66 0.587688
Target:  5'- cCGCGGCGCcccCGCuaggucggccaCGAGcGcCGCCGUGu -3'
miRNA:   3'- -GCGCCGCGcu-GCG-----------GCUC-CuGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 152321 0.66 0.596282
Target:  5'- uGCGGCGCGcguacGCGCCccugcuggcgcgcGAGaACGCCGn- -3'
miRNA:   3'- gCGCCGCGC-----UGCGG-------------CUCcUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 83812 0.66 0.587688
Target:  5'- cCGgGGCGggaguugccCGACG-CGAGGGCGCCc-- -3'
miRNA:   3'- -GCgCCGC---------GCUGCgGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 154350 0.66 0.587688
Target:  5'- uGCGcGCG-GACGCCGAcgcGGAcccCGCCGc- -3'
miRNA:   3'- gCGC-CGCgCUGCGGCU---CCU---GCGGCac -5'
21558 5' -63.5 NC_004812.1 + 106 0.66 0.597238
Target:  5'- gGCGcGCGCGGgGCCG-GGAgccCGCCc-- -3'
miRNA:   3'- gCGC-CGCGCUgCGGCuCCU---GCGGcac -5'
21558 5' -63.5 NC_004812.1 + 151900 0.66 0.587688
Target:  5'- gGCGGCcuggGCGACaGCCGcccggggcucugGGGcGCGCCGg- -3'
miRNA:   3'- gCGCCG----CGCUG-CGGC------------UCC-UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 121973 0.66 0.591505
Target:  5'- aGCGGCGggccugggcugggccUGAgCGCCGGgcgggacuuGGGCGCCGg- -3'
miRNA:   3'- gCGCCGC---------------GCU-GCGGCU---------CCUGCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.