miRNA display CGI


Results 1 - 20 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 62 0.71 0.335756
Target:  5'- gGCGGCGCGGCGCCacGcgcgcgcacucgcgaGGGACggGCCGg- -3'
miRNA:   3'- gCGCCGCGCUGCGG--C---------------UCCUG--CGGCac -5'
21558 5' -63.5 NC_004812.1 + 106 0.66 0.597238
Target:  5'- gGCGcGCGCGGgGCCG-GGAgccCGCCc-- -3'
miRNA:   3'- gCGC-CGCGCUgCGGCuCCU---GCGGcac -5'
21558 5' -63.5 NC_004812.1 + 139 0.68 0.485639
Target:  5'- gCGCGcGCGUGGCGCCGc-GcCGCCGc- -3'
miRNA:   3'- -GCGC-CGCGCUGCGGCucCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 191 0.71 0.354569
Target:  5'- uCGCGcGCGCGcCGCCGGGGGaggGCCc-- -3'
miRNA:   3'- -GCGC-CGCGCuGCGGCUCCUg--CGGcac -5'
21558 5' -63.5 NC_004812.1 + 550 0.68 0.485639
Target:  5'- gGCGGCGaCG-CGCCGcGcGACGCCc-- -3'
miRNA:   3'- gCGCCGC-GCuGCGGCuC-CUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 570 0.67 0.531175
Target:  5'- gCGCGGcCGCGuggaGCCGcGGGCGCgGc- -3'
miRNA:   3'- -GCGCC-GCGCug--CGGCuCCUGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 582 0.68 0.476752
Target:  5'- cCGCGGCGCGGCccccgGCCccGGGCGUCc-- -3'
miRNA:   3'- -GCGCCGCGCUG-----CGGcuCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 707 0.71 0.332927
Target:  5'- -uCGGCGCGGCaGCCc-GGGCGCCGg- -3'
miRNA:   3'- gcGCCGCGCUG-CGGcuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 712 0.73 0.267899
Target:  5'- cCGuCGGCGuCGGCGCCGGcgcGGuCGCCGg- -3'
miRNA:   3'- -GC-GCCGC-GCUGCGGCU---CCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 753 0.68 0.503645
Target:  5'- gGCGGCGCGAcccucuucccCGuCUGAGGGCcCCGc- -3'
miRNA:   3'- gCGCCGCGCU----------GC-GGCUCCUGcGGCac -5'
21558 5' -63.5 NC_004812.1 + 828 0.69 0.425236
Target:  5'- aGCGGUGUccGACGCCcgGAGGGCcccGCgCGUGu -3'
miRNA:   3'- gCGCCGCG--CUGCGG--CUCCUG---CG-GCAC- -5'
21558 5' -63.5 NC_004812.1 + 1220 0.68 0.480297
Target:  5'- gGCGGCGCcGCGggggcuccuccccgcCCGGGcGGCGCCGc- -3'
miRNA:   3'- gCGCCGCGcUGC---------------GGCUC-CUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 1341 0.68 0.521934
Target:  5'- cCGCGG-GCGGucCGCCGgaAGGccggcuaugcaaACGCCGUGc -3'
miRNA:   3'- -GCGCCgCGCU--GCGGC--UCC------------UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 1490 0.68 0.494605
Target:  5'- gGCGGCgGCGgaGCGCCGGccGGcccGCGCCGc- -3'
miRNA:   3'- gCGCCG-CGC--UGCGGCU--CC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 1673 0.67 0.578167
Target:  5'- cCGCGGCGCcGCgGCCcgcccgcggcgGGGGAUGCCc-- -3'
miRNA:   3'- -GCGCCGCGcUG-CGG-----------CUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 1954 0.68 0.485639
Target:  5'- uGCcGCGCGcGCGCCG-GG-CGCCGg- -3'
miRNA:   3'- gCGcCGCGC-UGCGGCuCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 1993 0.69 0.425236
Target:  5'- gGUGGCGgGuccCGCCGgcggucgcucGGGGCGCCGa- -3'
miRNA:   3'- gCGCCGCgCu--GCGGC----------UCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 2244 0.79 0.10141
Target:  5'- gCGCGGCGCGGCGgCGGGGuccGCGUCGg- -3'
miRNA:   3'- -GCGCCGCGCUGCgGCUCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 2290 0.75 0.18133
Target:  5'- aGCGGCGCGGCGUCGGGGu--CCGg- -3'
miRNA:   3'- gCGCCGCGCUGCGGCUCCugcGGCac -5'
21558 5' -63.5 NC_004812.1 + 2370 0.69 0.425236
Target:  5'- gGCGcGCGCGGCGUCGcGGuccaGCGCCa-- -3'
miRNA:   3'- gCGC-CGCGCUGCGGCuCC----UGCGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.