miRNA display CGI


Results 1 - 20 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 2852 1.07 0.001052
Target:  5'- aCGCGGCGCGACGCCGAGGACGCCGUGc -3'
miRNA:   3'- -GCGCCGCGCUGCGGCUCCUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 33753 1.07 0.001052
Target:  5'- aCGCGGCGCGACGCCGAGGACGCCGUGc -3'
miRNA:   3'- -GCGCCGCGCUGCGGCUCCUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 130897 0.87 0.03008
Target:  5'- uCGCGGCGCGGgGCCGGGGGCGUCGc- -3'
miRNA:   3'- -GCGCCGCGCUgCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 5389 0.87 0.03008
Target:  5'- uCGCGGCGCGGgGCCGGGGGCGUCGc- -3'
miRNA:   3'- -GCGCCGCGCUgCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 71909 0.86 0.033336
Target:  5'- gGCGGCGCGGCGCCGcGGGCGCUGc- -3'
miRNA:   3'- gCGCCGCGCUGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 48298 0.83 0.055545
Target:  5'- cCGCGGCG-GugGCCGAGGAgGCCGa- -3'
miRNA:   3'- -GCGCCGCgCugCGGCUCCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 67315 0.81 0.081064
Target:  5'- gCGCGaaGCGCGACGCCGGGGcuccGCGCCGc- -3'
miRNA:   3'- -GCGC--CGCGCUGCGGCUCC----UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 127752 0.79 0.10141
Target:  5'- gCGCGGCGCGGCGgCGGGGuccGCGUCGg- -3'
miRNA:   3'- -GCGCCGCGCUGCgGCUCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 18552 0.79 0.10141
Target:  5'- gGCGGCGCGuuGCCG-GGA-GCCGUGg -3'
miRNA:   3'- gCGCCGCGCugCGGCuCCUgCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 2244 0.79 0.10141
Target:  5'- gCGCGGCGCGGCGgCGGGGuccGCGUCGg- -3'
miRNA:   3'- -GCGCCGCGCUGCgGCUCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 109321 0.79 0.106021
Target:  5'- gGCGGCgcuggagGCGGCGCCGcgcuaccGGGGCGCCGUa -3'
miRNA:   3'- gCGCCG-------CGCUGCGGC-------UCCUGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 115433 0.79 0.111924
Target:  5'- -cCGGCGCGGCGCCGAGaGCGCC-UGg -3'
miRNA:   3'- gcGCCGCGCUGCGGCUCcUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 19887 0.79 0.111924
Target:  5'- aGCGGCGCGGCgGCgGGGGACGCgGc- -3'
miRNA:   3'- gCGCCGCGCUG-CGgCUCCUGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 47764 0.79 0.111924
Target:  5'- aGCGcCGCGGCGCUGGGGGCGUCGg- -3'
miRNA:   3'- gCGCcGCGCUGCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 58766 0.78 0.114708
Target:  5'- gGCGGCGCccGGCGagCGAGGGCGCgGUGg -3'
miRNA:   3'- gCGCCGCG--CUGCg-GCUCCUGCGgCAC- -5'
21558 5' -63.5 NC_004812.1 + 21170 0.78 0.114708
Target:  5'- uGCcGCGgGACGCCGAGGcgcGCGUCGUGg -3'
miRNA:   3'- gCGcCGCgCUGCGGCUCC---UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 87733 0.78 0.114708
Target:  5'- gGCGGCGCgGGCGCCGGGGcCGCgGa- -3'
miRNA:   3'- gCGCCGCG-CUGCGGCUCCuGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 65761 0.78 0.117556
Target:  5'- cCGCGGCGCcggcuuccGCGCCGcGGGCGCCGg- -3'
miRNA:   3'- -GCGCCGCGc-------UGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 135987 0.78 0.123451
Target:  5'- gGCGGUGCGGCGCgUGAcGGACGCCcUGa -3'
miRNA:   3'- gCGCCGCGCUGCG-GCU-CCUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 97148 0.78 0.12962
Target:  5'- cCGCGGuCGCGugguugauCGCCGGGGuCGUCGUGg -3'
miRNA:   3'- -GCGCC-GCGCu-------GCGGCUCCuGCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.